Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Lsm1Q8VC85 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Lsm1Q8VC85 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Lsm1Q8VC85 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
Lsm1Q8VC85 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC18.39■□□□□ 0.53
Lsm1Q8VC85 Gm9847-201ENSMUST00000052528 599 ntBASIC18.39■□□□□ 0.53
Lsm1Q8VC85 BC021767-201ENSMUST00000126387 1716 ntBASIC18.39■□□□□ 0.53
Lsm1Q8VC85 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Lsm1Q8VC85 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Lsm1Q8VC85 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Lsm1Q8VC85 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Lsm1Q8VC85 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Lsm1Q8VC85 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Lsm1Q8VC85 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC18.38■□□□□ 0.53
Lsm1Q8VC85 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Lsm1Q8VC85 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC18.38■□□□□ 0.53
Lsm1Q8VC85 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Lsm1Q8VC85 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Lsm1Q8VC85 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Lsm1Q8VC85 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Lsm1Q8VC85 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
Lsm1Q8VC85 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Lsm1Q8VC85 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Lsm1Q8VC85 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Lsm1Q8VC85 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Lsm1Q8VC85 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Lsm1Q8VC85 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Lsm1Q8VC85 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Lsm1Q8VC85 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Lsm1Q8VC85 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Lsm1Q8VC85 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Lsm1Q8VC85 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Lsm1Q8VC85 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Lsm1Q8VC85 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Lsm1Q8VC85 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Lsm1Q8VC85 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Lsm1Q8VC85 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lsm1Q8VC85 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lsm1Q8VC85 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lsm1Q8VC85 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Lsm1Q8VC85 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lsm1Q8VC85 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lsm1Q8VC85 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lsm1Q8VC85 Spcs1-204ENSMUST00000226782 949 ntBASIC18.36■□□□□ 0.53
Lsm1Q8VC85 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lsm1Q8VC85 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lsm1Q8VC85 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lsm1Q8VC85 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lsm1Q8VC85 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Lsm1Q8VC85 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lsm1Q8VC85 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
Lsm1Q8VC85 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lsm1Q8VC85 Rncr4-201ENSMUST00000194541 2234 ntBASIC18.35■□□□□ 0.53
Lsm1Q8VC85 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lsm1Q8VC85 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lsm1Q8VC85 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lsm1Q8VC85 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lsm1Q8VC85 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
Lsm1Q8VC85 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lsm1Q8VC85 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lsm1Q8VC85 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Lsm1Q8VC85 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lsm1Q8VC85 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lsm1Q8VC85 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Lsm1Q8VC85 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC18.35■□□□□ 0.53
Lsm1Q8VC85 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lsm1Q8VC85 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Lsm1Q8VC85 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Lsm1Q8VC85 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Lsm1Q8VC85 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lsm1Q8VC85 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Lsm1Q8VC85 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
Lsm1Q8VC85 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Lsm1Q8VC85 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Lsm1Q8VC85 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Lsm1Q8VC85 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Lsm1Q8VC85 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC18.34■□□□□ 0.53
Lsm1Q8VC85 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Lsm1Q8VC85 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Lsm1Q8VC85 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Lsm1Q8VC85 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Lsm1Q8VC85 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Lsm1Q8VC85 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Lsm1Q8VC85 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Lsm1Q8VC85 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Lsm1Q8VC85 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Lsm1Q8VC85 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Lsm1Q8VC85 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Lsm1Q8VC85 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Lsm1Q8VC85 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Lsm1Q8VC85 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Lsm1Q8VC85 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Lsm1Q8VC85 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Lsm1Q8VC85 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Lsm1Q8VC85 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Lsm1Q8VC85 Gm43137-201ENSMUST00000198052 594 ntBASIC18.33■□□□□ 0.52
Lsm1Q8VC85 Gm43182-201ENSMUST00000199476 2528 ntBASIC18.33■□□□□ 0.52
Lsm1Q8VC85 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Lsm1Q8VC85 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Lsm1Q8VC85 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms