Protein–RNA interactions for Protein: Q8CDY9

Pcdhb7, Protocadherin beta 7, mousemouse

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhb7Q8CDY9 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdhb7Q8CDY9 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdhb7Q8CDY9 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdhb7Q8CDY9 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdhb7Q8CDY9 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdhb7Q8CDY9 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
Pcdhb7Q8CDY9 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdhb7Q8CDY9 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC19.21■□□□□ 0.67
Pcdhb7Q8CDY9 Appbp2os-202ENSMUST00000206972 447 ntBASIC19.21■□□□□ 0.67
Pcdhb7Q8CDY9 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC19.21■□□□□ 0.67
Pcdhb7Q8CDY9 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC19.21■□□□□ 0.67
Pcdhb7Q8CDY9 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdhb7Q8CDY9 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdhb7Q8CDY9 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Pcdhb7Q8CDY9 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdhb7Q8CDY9 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC19.21■□□□□ 0.67
Pcdhb7Q8CDY9 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC19.21■□□□□ 0.66
Pcdhb7Q8CDY9 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdhb7Q8CDY9 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdhb7Q8CDY9 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdhb7Q8CDY9 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC19.2■□□□□ 0.66
Pcdhb7Q8CDY9 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC19.2■□□□□ 0.66
Pcdhb7Q8CDY9 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Pcdhb7Q8CDY9 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdhb7Q8CDY9 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdhb7Q8CDY9 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdhb7Q8CDY9 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdhb7Q8CDY9 Spcs1-204ENSMUST00000226782 949 ntBASIC19.19■□□□□ 0.66
Pcdhb7Q8CDY9 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC19.19■□□□□ 0.66
Pcdhb7Q8CDY9 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdhb7Q8CDY9 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdhb7Q8CDY9 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdhb7Q8CDY9 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdhb7Q8CDY9 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdhb7Q8CDY9 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdhb7Q8CDY9 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdhb7Q8CDY9 Golph3-205ENSMUST00000228671 2842 ntBASIC19.19■□□□□ 0.66
Pcdhb7Q8CDY9 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdhb7Q8CDY9 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdhb7Q8CDY9 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdhb7Q8CDY9 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdhb7Q8CDY9 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC19.18■□□□□ 0.66
Pcdhb7Q8CDY9 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdhb7Q8CDY9 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdhb7Q8CDY9 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdhb7Q8CDY9 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC19.18■□□□□ 0.66
Pcdhb7Q8CDY9 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdhb7Q8CDY9 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
Pcdhb7Q8CDY9 Mir7075-201ENSMUST00000184187 82 ntBASIC19.18■□□□□ 0.66
Pcdhb7Q8CDY9 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC19.18■□□□□ 0.66
Pcdhb7Q8CDY9 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdhb7Q8CDY9 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdhb7Q8CDY9 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdhb7Q8CDY9 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdhb7Q8CDY9 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
Pcdhb7Q8CDY9 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdhb7Q8CDY9 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdhb7Q8CDY9 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdhb7Q8CDY9 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
Pcdhb7Q8CDY9 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdhb7Q8CDY9 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC19.17■□□□□ 0.66
Pcdhb7Q8CDY9 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdhb7Q8CDY9 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdhb7Q8CDY9 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdhb7Q8CDY9 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdhb7Q8CDY9 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdhb7Q8CDY9 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdhb7Q8CDY9 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdhb7Q8CDY9 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdhb7Q8CDY9 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdhb7Q8CDY9 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdhb7Q8CDY9 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdhb7Q8CDY9 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdhb7Q8CDY9 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Pcdhb7Q8CDY9 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Pcdhb7Q8CDY9 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdhb7Q8CDY9 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Pcdhb7Q8CDY9 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Pcdhb7Q8CDY9 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Pcdhb7Q8CDY9 Gm27454-201ENSMUST00000185090 204 ntBASIC19.15■□□□□ 0.66
Pcdhb7Q8CDY9 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC19.15■□□□□ 0.66
Pcdhb7Q8CDY9 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Pcdhb7Q8CDY9 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Pcdhb7Q8CDY9 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Pcdhb7Q8CDY9 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Pcdhb7Q8CDY9 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.66
Pcdhb7Q8CDY9 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
Pcdhb7Q8CDY9 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Pcdhb7Q8CDY9 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Pcdhb7Q8CDY9 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Pcdhb7Q8CDY9 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Pcdhb7Q8CDY9 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Pcdhb7Q8CDY9 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Pcdhb7Q8CDY9 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Pcdhb7Q8CDY9 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Pcdhb7Q8CDY9 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Pcdhb7Q8CDY9 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Pcdhb7Q8CDY9 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Pcdhb7Q8CDY9 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Pcdhb7Q8CDY9 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 20.7 ms