Protein–RNA interactions for Protein: Q8BJ37

Tdp1, Tyrosyl-DNA phosphodiesterase 1, mousemouse

Predictions only

Length 609 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tdp1Q8BJ37 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Tdp1Q8BJ37 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Tdp1Q8BJ37 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC21.29■■□□□ 1
Tdp1Q8BJ37 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC21.29■■□□□ 1
Tdp1Q8BJ37 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC21.29■■□□□ 1
Tdp1Q8BJ37 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC21.29■■□□□ 1
Tdp1Q8BJ37 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC21.29■■□□□ 1
Tdp1Q8BJ37 Gm37856-201ENSMUST00000191634 999 ntBASIC21.29■■□□□ 1
Tdp1Q8BJ37 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
Tdp1Q8BJ37 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC21.29■■□□□ 1
Tdp1Q8BJ37 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC21.29■■□□□ 1
Tdp1Q8BJ37 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Tdp1Q8BJ37 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Tdp1Q8BJ37 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Tdp1Q8BJ37 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
Tdp1Q8BJ37 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Tdp1Q8BJ37 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC21.28■■□□□ 1
Tdp1Q8BJ37 Gm13168-201ENSMUST00000121771 632 ntBASIC21.28■■□□□ 1
Tdp1Q8BJ37 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC21.28■■□□□ 1
Tdp1Q8BJ37 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC21.28■■□□□ 1
Tdp1Q8BJ37 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC21.28■■□□□ 1
Tdp1Q8BJ37 Gm26524-201ENSMUST00000192339 390 ntBASIC21.28■■□□□ 1
Tdp1Q8BJ37 Gm44672-201ENSMUST00000206944 1098 ntBASIC21.28■■□□□ 1
Tdp1Q8BJ37 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Tdp1Q8BJ37 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC21.28■■□□□ 1
Tdp1Q8BJ37 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Tdp1Q8BJ37 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Tdp1Q8BJ37 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Tdp1Q8BJ37 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Tdp1Q8BJ37 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC21.27■■□□□ 1
Tdp1Q8BJ37 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Tdp1Q8BJ37 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Tdp1Q8BJ37 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Tdp1Q8BJ37 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC21.27■■□□□ 1
Tdp1Q8BJ37 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
Tdp1Q8BJ37 Gm37563-201ENSMUST00000192580 1513 ntBASIC21.27■■□□□ 1
Tdp1Q8BJ37 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Tdp1Q8BJ37 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Tdp1Q8BJ37 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC21.27■□□□□ 0.99
Tdp1Q8BJ37 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Tdp1Q8BJ37 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Tdp1Q8BJ37 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC21.26■□□□□ 0.99
Tdp1Q8BJ37 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Tdp1Q8BJ37 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Tdp1Q8BJ37 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
Tdp1Q8BJ37 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Tdp1Q8BJ37 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Tdp1Q8BJ37 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Tdp1Q8BJ37 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Tdp1Q8BJ37 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC21.25■□□□□ 0.99
Tdp1Q8BJ37 Gm10252-201ENSMUST00000209541 832 ntBASIC21.25■□□□□ 0.99
Tdp1Q8BJ37 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Tdp1Q8BJ37 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Tdp1Q8BJ37 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Tdp1Q8BJ37 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC21.25■□□□□ 0.99
Tdp1Q8BJ37 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Tdp1Q8BJ37 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Tdp1Q8BJ37 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Tdp1Q8BJ37 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Tdp1Q8BJ37 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Tdp1Q8BJ37 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Tdp1Q8BJ37 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Tdp1Q8BJ37 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Tdp1Q8BJ37 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Tdp1Q8BJ37 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Tdp1Q8BJ37 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
Tdp1Q8BJ37 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC21.24■□□□□ 0.99
Tdp1Q8BJ37 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Tdp1Q8BJ37 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Tdp1Q8BJ37 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Tdp1Q8BJ37 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Tdp1Q8BJ37 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Tdp1Q8BJ37 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Tdp1Q8BJ37 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Tdp1Q8BJ37 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Tdp1Q8BJ37 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Tdp1Q8BJ37 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Tdp1Q8BJ37 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Tdp1Q8BJ37 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Tdp1Q8BJ37 Rab3c-203ENSMUST00000224180 967 ntBASIC21.23■□□□□ 0.99
Tdp1Q8BJ37 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Tdp1Q8BJ37 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Tdp1Q8BJ37 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Tdp1Q8BJ37 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC21.23■□□□□ 0.99
Tdp1Q8BJ37 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Tdp1Q8BJ37 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Tdp1Q8BJ37 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Tdp1Q8BJ37 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Tdp1Q8BJ37 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Tdp1Q8BJ37 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Tdp1Q8BJ37 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Tdp1Q8BJ37 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Tdp1Q8BJ37 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC21.22■□□□□ 0.99
Tdp1Q8BJ37 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Tdp1Q8BJ37 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Tdp1Q8BJ37 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Tdp1Q8BJ37 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC21.22■□□□□ 0.99
Tdp1Q8BJ37 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Tdp1Q8BJ37 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Tdp1Q8BJ37 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms