Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Ddx55Q6ZPL9 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Ddx55Q6ZPL9 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Ddx55Q6ZPL9 Gm6802-201ENSMUST00000167843 1983 ntBASIC22.06■■□□□ 1.12
Ddx55Q6ZPL9 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Ddx55Q6ZPL9 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Ddx55Q6ZPL9 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
Ddx55Q6ZPL9 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC22.06■■□□□ 1.12
Ddx55Q6ZPL9 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Ddx55Q6ZPL9 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
Ddx55Q6ZPL9 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Ddx55Q6ZPL9 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
Ddx55Q6ZPL9 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Ddx55Q6ZPL9 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Ddx55Q6ZPL9 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Ddx55Q6ZPL9 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Ddx55Q6ZPL9 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC22.05■■□□□ 1.12
Ddx55Q6ZPL9 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Ddx55Q6ZPL9 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC22.04■■□□□ 1.12
Ddx55Q6ZPL9 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Ddx55Q6ZPL9 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Ddx55Q6ZPL9 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Ddx55Q6ZPL9 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Ddx55Q6ZPL9 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Ddx55Q6ZPL9 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Ddx55Q6ZPL9 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Ddx55Q6ZPL9 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Ddx55Q6ZPL9 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Ddx55Q6ZPL9 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
Ddx55Q6ZPL9 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC22.03■■□□□ 1.12
Ddx55Q6ZPL9 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC22.03■■□□□ 1.12
Ddx55Q6ZPL9 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Ddx55Q6ZPL9 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC22.03■■□□□ 1.12
Ddx55Q6ZPL9 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
Ddx55Q6ZPL9 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Ddx55Q6ZPL9 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Ddx55Q6ZPL9 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Ddx55Q6ZPL9 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Ddx55Q6ZPL9 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC22.02■■□□□ 1.12
Ddx55Q6ZPL9 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Ddx55Q6ZPL9 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC22.02■■□□□ 1.12
Ddx55Q6ZPL9 AC135963.1-201ENSMUST00000211640 717 ntBASIC22.02■■□□□ 1.12
Ddx55Q6ZPL9 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Ddx55Q6ZPL9 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Ddx55Q6ZPL9 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC22.02■■□□□ 1.12
Ddx55Q6ZPL9 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.11
Ddx55Q6ZPL9 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
Ddx55Q6ZPL9 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
Ddx55Q6ZPL9 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC22.01■■□□□ 1.11
Ddx55Q6ZPL9 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Ddx55Q6ZPL9 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Ddx55Q6ZPL9 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Ddx55Q6ZPL9 Gm2559-201ENSMUST00000201323 363 ntBASIC22.01■■□□□ 1.11
Ddx55Q6ZPL9 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Ddx55Q6ZPL9 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Ddx55Q6ZPL9 Dio3-201ENSMUST00000097228 1449 ntBASIC22■■□□□ 1.11
Ddx55Q6ZPL9 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC22■■□□□ 1.11
Ddx55Q6ZPL9 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC22■■□□□ 1.11
Ddx55Q6ZPL9 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC22■■□□□ 1.11
Ddx55Q6ZPL9 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC22■■□□□ 1.11
Ddx55Q6ZPL9 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
Ddx55Q6ZPL9 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC22■■□□□ 1.11
Ddx55Q6ZPL9 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC22■■□□□ 1.11
Ddx55Q6ZPL9 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC22■■□□□ 1.11
Ddx55Q6ZPL9 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Ddx55Q6ZPL9 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Ddx55Q6ZPL9 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Ddx55Q6ZPL9 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Ddx55Q6ZPL9 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
Ddx55Q6ZPL9 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC21.99■■□□□ 1.11
Ddx55Q6ZPL9 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Ddx55Q6ZPL9 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Ddx55Q6ZPL9 Dmtn-209ENSMUST00000228295 2572 ntBASIC21.98■■□□□ 1.11
Ddx55Q6ZPL9 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Ddx55Q6ZPL9 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC21.98■■□□□ 1.11
Ddx55Q6ZPL9 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC21.98■■□□□ 1.11
Ddx55Q6ZPL9 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ddx55Q6ZPL9 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ddx55Q6ZPL9 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ddx55Q6ZPL9 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ddx55Q6ZPL9 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ddx55Q6ZPL9 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Ddx55Q6ZPL9 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Ddx55Q6ZPL9 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
Ddx55Q6ZPL9 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Ddx55Q6ZPL9 Snhg20-203ENSMUST00000182811 2153 ntBASIC21.97■■□□□ 1.11
Ddx55Q6ZPL9 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Ddx55Q6ZPL9 Gm6576-201ENSMUST00000169678 883 ntBASIC21.97■■□□□ 1.11
Ddx55Q6ZPL9 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
Ddx55Q6ZPL9 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC21.97■■□□□ 1.11
Ddx55Q6ZPL9 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Ddx55Q6ZPL9 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Ddx55Q6ZPL9 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Ddx55Q6ZPL9 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Ddx55Q6ZPL9 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Ddx55Q6ZPL9 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Ddx55Q6ZPL9 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Ddx55Q6ZPL9 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
Ddx55Q6ZPL9 Gm26971-201ENSMUST00000182423 1072 ntBASIC21.96■■□□□ 1.11
Ddx55Q6ZPL9 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC21.96■■□□□ 1.11
Retrieved 100 of 76,532 protein–RNA pairs in 15.5 ms