Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Smarca1Q6PGB8 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Smarca1Q6PGB8 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Smarca1Q6PGB8 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Smarca1Q6PGB8 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
Smarca1Q6PGB8 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
Smarca1Q6PGB8 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Smarca1Q6PGB8 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC21.38■■□□□ 1.01
Smarca1Q6PGB8 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Smarca1Q6PGB8 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Smarca1Q6PGB8 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Smarca1Q6PGB8 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Smarca1Q6PGB8 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC21.37■■□□□ 1.01
Smarca1Q6PGB8 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Smarca1Q6PGB8 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Smarca1Q6PGB8 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC21.37■■□□□ 1.01
Smarca1Q6PGB8 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
Smarca1Q6PGB8 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Smarca1Q6PGB8 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Smarca1Q6PGB8 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Smarca1Q6PGB8 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Smarca1Q6PGB8 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Smarca1Q6PGB8 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Smarca1Q6PGB8 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Smarca1Q6PGB8 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC21.36■■□□□ 1.01
Smarca1Q6PGB8 AC099934.2-201ENSMUST00000196389 70 ntBASIC21.36■■□□□ 1.01
Smarca1Q6PGB8 AC156953.1-201ENSMUST00000196953 70 ntBASIC21.36■■□□□ 1.01
Smarca1Q6PGB8 AC157822.2-201ENSMUST00000200291 70 ntBASIC21.36■■□□□ 1.01
Smarca1Q6PGB8 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Smarca1Q6PGB8 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Smarca1Q6PGB8 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Smarca1Q6PGB8 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
Smarca1Q6PGB8 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Smarca1Q6PGB8 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Smarca1Q6PGB8 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Smarca1Q6PGB8 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Smarca1Q6PGB8 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Smarca1Q6PGB8 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
Smarca1Q6PGB8 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Smarca1Q6PGB8 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Smarca1Q6PGB8 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
Smarca1Q6PGB8 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
Smarca1Q6PGB8 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Smarca1Q6PGB8 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC21.35■■□□□ 1.01
Smarca1Q6PGB8 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Smarca1Q6PGB8 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Smarca1Q6PGB8 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Smarca1Q6PGB8 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Smarca1Q6PGB8 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Smarca1Q6PGB8 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Smarca1Q6PGB8 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Smarca1Q6PGB8 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Smarca1Q6PGB8 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Smarca1Q6PGB8 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Smarca1Q6PGB8 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC21.34■■□□□ 1.01
Smarca1Q6PGB8 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Smarca1Q6PGB8 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
Smarca1Q6PGB8 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Smarca1Q6PGB8 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC21.34■■□□□ 1.01
Smarca1Q6PGB8 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Smarca1Q6PGB8 Gm10571-201ENSMUST00000097869 1638 ntBASIC21.33■■□□□ 1.01
Smarca1Q6PGB8 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Smarca1Q6PGB8 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC21.33■■□□□ 1.01
Smarca1Q6PGB8 Gm45640-201ENSMUST00000210665 1896 ntBASIC21.33■■□□□ 1.01
Smarca1Q6PGB8 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC21.33■■□□□ 1.01
Smarca1Q6PGB8 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC21.33■■□□□ 1.01
Smarca1Q6PGB8 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Smarca1Q6PGB8 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Smarca1Q6PGB8 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Smarca1Q6PGB8 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC21.33■■□□□ 1
Smarca1Q6PGB8 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Smarca1Q6PGB8 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Smarca1Q6PGB8 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Smarca1Q6PGB8 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Smarca1Q6PGB8 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Smarca1Q6PGB8 Gm5112-201ENSMUST00000204407 2368 ntBASIC21.32■■□□□ 1
Smarca1Q6PGB8 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC21.32■■□□□ 1
Smarca1Q6PGB8 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC21.32■■□□□ 1
Smarca1Q6PGB8 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Smarca1Q6PGB8 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC21.32■■□□□ 1
Smarca1Q6PGB8 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC21.32■■□□□ 1
Smarca1Q6PGB8 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Smarca1Q6PGB8 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Smarca1Q6PGB8 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC21.32■■□□□ 1
Smarca1Q6PGB8 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Smarca1Q6PGB8 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Smarca1Q6PGB8 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Smarca1Q6PGB8 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Smarca1Q6PGB8 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC21.31■■□□□ 1
Smarca1Q6PGB8 Golph3-205ENSMUST00000228671 2842 ntBASIC21.31■■□□□ 1
Smarca1Q6PGB8 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Smarca1Q6PGB8 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC21.31■■□□□ 1
Smarca1Q6PGB8 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Smarca1Q6PGB8 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Smarca1Q6PGB8 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC21.3■■□□□ 1
Smarca1Q6PGB8 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Smarca1Q6PGB8 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Smarca1Q6PGB8 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Smarca1Q6PGB8 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Smarca1Q6PGB8 Gm42642-201ENSMUST00000200683 355 ntBASIC21.3■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms