Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC31.7■■■□□ 2.66
Ccdc88bQ4QRL3 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC31.7■■■□□ 2.66
Ccdc88bQ4QRL3 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC31.7■■■□□ 2.66
Ccdc88bQ4QRL3 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
Ccdc88bQ4QRL3 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC31.69■■■□□ 2.66
Ccdc88bQ4QRL3 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC31.69■■■□□ 2.66
Ccdc88bQ4QRL3 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
Ccdc88bQ4QRL3 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC31.69■■■□□ 2.66
Ccdc88bQ4QRL3 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
Ccdc88bQ4QRL3 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
Ccdc88bQ4QRL3 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
Ccdc88bQ4QRL3 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
Ccdc88bQ4QRL3 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC31.68■■■□□ 2.66
Ccdc88bQ4QRL3 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
Ccdc88bQ4QRL3 Gm6277-202ENSMUST00000224036 2779 ntBASIC31.67■■■□□ 2.66
Ccdc88bQ4QRL3 Mir7071-201ENSMUST00000184847 69 ntBASIC31.67■■■□□ 2.66
Ccdc88bQ4QRL3 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC31.67■■■□□ 2.66
Ccdc88bQ4QRL3 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
Ccdc88bQ4QRL3 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
Ccdc88bQ4QRL3 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
Ccdc88bQ4QRL3 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC31.66■■■□□ 2.66
Ccdc88bQ4QRL3 Gm20049-201ENSMUST00000219950 730 ntBASIC31.66■■■□□ 2.66
Ccdc88bQ4QRL3 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
Ccdc88bQ4QRL3 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
Ccdc88bQ4QRL3 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC31.66■■■□□ 2.66
Ccdc88bQ4QRL3 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC31.66■■■□□ 2.66
Ccdc88bQ4QRL3 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC31.65■■■□□ 2.66
Ccdc88bQ4QRL3 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
Ccdc88bQ4QRL3 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC31.65■■■□□ 2.66
Ccdc88bQ4QRL3 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC31.65■■■□□ 2.66
Ccdc88bQ4QRL3 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
Ccdc88bQ4QRL3 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC31.65■■■□□ 2.66
Ccdc88bQ4QRL3 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
Ccdc88bQ4QRL3 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
Ccdc88bQ4QRL3 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC31.64■■■□□ 2.66
Ccdc88bQ4QRL3 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
Ccdc88bQ4QRL3 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC31.63■■■□□ 2.65
Ccdc88bQ4QRL3 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
Ccdc88bQ4QRL3 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
Ccdc88bQ4QRL3 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
Ccdc88bQ4QRL3 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
Ccdc88bQ4QRL3 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
Ccdc88bQ4QRL3 Gm37563-201ENSMUST00000192580 1513 ntBASIC31.63■■■□□ 2.65
Ccdc88bQ4QRL3 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC31.62■■■□□ 2.65
Ccdc88bQ4QRL3 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
Ccdc88bQ4QRL3 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC31.62■■■□□ 2.65
Ccdc88bQ4QRL3 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Ccdc88bQ4QRL3 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC31.61■■■□□ 2.65
Ccdc88bQ4QRL3 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
Ccdc88bQ4QRL3 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC31.61■■■□□ 2.65
Ccdc88bQ4QRL3 Gm3807-201ENSMUST00000193520 1168 ntBASIC31.61■■■□□ 2.65
Ccdc88bQ4QRL3 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
Ccdc88bQ4QRL3 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC31.6■■■□□ 2.65
Ccdc88bQ4QRL3 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
Ccdc88bQ4QRL3 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
Ccdc88bQ4QRL3 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
Ccdc88bQ4QRL3 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC31.6■■■□□ 2.65
Ccdc88bQ4QRL3 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
Ccdc88bQ4QRL3 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
Ccdc88bQ4QRL3 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC31.59■■■□□ 2.65
Ccdc88bQ4QRL3 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC31.59■■■□□ 2.65
Ccdc88bQ4QRL3 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
Ccdc88bQ4QRL3 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
Ccdc88bQ4QRL3 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC31.59■■■□□ 2.65
Ccdc88bQ4QRL3 Gm26971-201ENSMUST00000182423 1072 ntBASIC31.59■■■□□ 2.65
Ccdc88bQ4QRL3 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Ccdc88bQ4QRL3 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Ccdc88bQ4QRL3 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
Ccdc88bQ4QRL3 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Ccdc88bQ4QRL3 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
Ccdc88bQ4QRL3 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC31.58■■■□□ 2.65
Ccdc88bQ4QRL3 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC31.58■■■□□ 2.65
Ccdc88bQ4QRL3 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Ccdc88bQ4QRL3 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
Ccdc88bQ4QRL3 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
Ccdc88bQ4QRL3 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
Ccdc88bQ4QRL3 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC31.56■■■□□ 2.64
Ccdc88bQ4QRL3 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC31.56■■■□□ 2.64
Ccdc88bQ4QRL3 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC31.56■■■□□ 2.64
Ccdc88bQ4QRL3 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC31.56■■■□□ 2.64
Ccdc88bQ4QRL3 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC31.56■■■□□ 2.64
Ccdc88bQ4QRL3 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
Ccdc88bQ4QRL3 Gm37856-201ENSMUST00000191634 999 ntBASIC31.56■■■□□ 2.64
Ccdc88bQ4QRL3 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
Ccdc88bQ4QRL3 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
Ccdc88bQ4QRL3 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC31.56■■■□□ 2.64
Ccdc88bQ4QRL3 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC31.55■■■□□ 2.64
Ccdc88bQ4QRL3 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC31.55■■■□□ 2.64
Ccdc88bQ4QRL3 Gm37352-201ENSMUST00000193908 2181 ntBASIC31.54■■■□□ 2.64
Ccdc88bQ4QRL3 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
Ccdc88bQ4QRL3 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC31.54■■■□□ 2.64
Ccdc88bQ4QRL3 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC31.54■■■□□ 2.64
Ccdc88bQ4QRL3 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC31.54■■■□□ 2.64
Ccdc88bQ4QRL3 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
Ccdc88bQ4QRL3 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
Ccdc88bQ4QRL3 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
Ccdc88bQ4QRL3 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
Ccdc88bQ4QRL3 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
Ccdc88bQ4QRL3 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
Ccdc88bQ4QRL3 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC31.52■■■□□ 2.64
Retrieved 100 of 76,532 protein–RNA pairs in 14.5 ms