Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col28a1Q2UY11 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col28a1Q2UY11 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Col28a1Q2UY11 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col28a1Q2UY11 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col28a1Q2UY11 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col28a1Q2UY11 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col28a1Q2UY11 Gm6627-201ENSMUST00000218299 2386 ntBASIC18.56■□□□□ 0.56
Col28a1Q2UY11 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col28a1Q2UY11 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col28a1Q2UY11 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC18.56■□□□□ 0.56
Col28a1Q2UY11 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col28a1Q2UY11 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col28a1Q2UY11 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col28a1Q2UY11 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col28a1Q2UY11 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col28a1Q2UY11 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col28a1Q2UY11 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Col28a1Q2UY11 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col28a1Q2UY11 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col28a1Q2UY11 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Col28a1Q2UY11 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Col28a1Q2UY11 BC021767-201ENSMUST00000126387 1716 ntBASIC18.55■□□□□ 0.56
Col28a1Q2UY11 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col28a1Q2UY11 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Col28a1Q2UY11 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col28a1Q2UY11 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC18.55■□□□□ 0.56
Col28a1Q2UY11 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
Col28a1Q2UY11 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col28a1Q2UY11 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Col28a1Q2UY11 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col28a1Q2UY11 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC18.54■□□□□ 0.56
Col28a1Q2UY11 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
Col28a1Q2UY11 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col28a1Q2UY11 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col28a1Q2UY11 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col28a1Q2UY11 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col28a1Q2UY11 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col28a1Q2UY11 Gm5297-201ENSMUST00000198555 1171 ntBASIC18.54■□□□□ 0.56
Col28a1Q2UY11 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Col28a1Q2UY11 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Col28a1Q2UY11 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col28a1Q2UY11 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC18.54■□□□□ 0.56
Col28a1Q2UY11 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col28a1Q2UY11 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC18.54■□□□□ 0.56
Col28a1Q2UY11 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col28a1Q2UY11 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col28a1Q2UY11 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Col28a1Q2UY11 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC18.53■□□□□ 0.56
Col28a1Q2UY11 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col28a1Q2UY11 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col28a1Q2UY11 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Col28a1Q2UY11 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col28a1Q2UY11 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col28a1Q2UY11 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col28a1Q2UY11 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col28a1Q2UY11 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col28a1Q2UY11 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Col28a1Q2UY11 Gm45640-201ENSMUST00000210665 1896 ntBASIC18.52■□□□□ 0.56
Col28a1Q2UY11 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col28a1Q2UY11 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col28a1Q2UY11 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col28a1Q2UY11 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC18.52■□□□□ 0.56
Col28a1Q2UY11 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
Col28a1Q2UY11 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC18.52■□□□□ 0.56
Col28a1Q2UY11 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC18.52■□□□□ 0.56
Col28a1Q2UY11 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
Col28a1Q2UY11 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC18.52■□□□□ 0.55
Col28a1Q2UY11 Gm18688-201ENSMUST00000204695 1859 ntBASIC18.52■□□□□ 0.55
Col28a1Q2UY11 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Col28a1Q2UY11 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Col28a1Q2UY11 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col28a1Q2UY11 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Col28a1Q2UY11 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col28a1Q2UY11 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Col28a1Q2UY11 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Col28a1Q2UY11 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col28a1Q2UY11 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col28a1Q2UY11 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col28a1Q2UY11 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Col28a1Q2UY11 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC18.5■□□□□ 0.55
Col28a1Q2UY11 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Col28a1Q2UY11 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Col28a1Q2UY11 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col28a1Q2UY11 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC18.5■□□□□ 0.55
Col28a1Q2UY11 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Col28a1Q2UY11 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
Col28a1Q2UY11 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col28a1Q2UY11 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col28a1Q2UY11 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
Col28a1Q2UY11 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col28a1Q2UY11 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Col28a1Q2UY11 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Col28a1Q2UY11 Gm43530-201ENSMUST00000195920 274 ntBASIC18.49■□□□□ 0.55
Col28a1Q2UY11 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col28a1Q2UY11 Dapk1-207ENSMUST00000226059 5009 ntBASIC18.49■□□□□ 0.55
Col28a1Q2UY11 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col28a1Q2UY11 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col28a1Q2UY11 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col28a1Q2UY11 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 45.3 ms