Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Hmgb1P63158 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Hmgb1P63158 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Hmgb1P63158 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Hmgb1P63158 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Hmgb1P63158 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Hmgb1P63158 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Hmgb1P63158 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Hmgb1P63158 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
Hmgb1P63158 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Hmgb1P63158 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Hmgb1P63158 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Hmgb1P63158 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Hmgb1P63158 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Hmgb1P63158 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Hmgb1P63158 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Hmgb1P63158 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC21.03■□□□□ 0.96
Hmgb1P63158 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Hmgb1P63158 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Hmgb1P63158 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC21.03■□□□□ 0.96
Hmgb1P63158 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Hmgb1P63158 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Hmgb1P63158 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Hmgb1P63158 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Hmgb1P63158 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Hmgb1P63158 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Hmgb1P63158 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
Hmgb1P63158 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Hmgb1P63158 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Hmgb1P63158 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Hmgb1P63158 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Hmgb1P63158 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Hmgb1P63158 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Hmgb1P63158 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
Hmgb1P63158 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Hmgb1P63158 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC21.02■□□□□ 0.96
Hmgb1P63158 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
Hmgb1P63158 Gm13241-201ENSMUST00000094493 780 ntBASIC21.02■□□□□ 0.96
Hmgb1P63158 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
Hmgb1P63158 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.95
Hmgb1P63158 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Hmgb1P63158 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Hmgb1P63158 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Hmgb1P63158 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Hmgb1P63158 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC21.01■□□□□ 0.95
Hmgb1P63158 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Hmgb1P63158 Gm37352-201ENSMUST00000193908 2181 ntBASIC21.01■□□□□ 0.95
Hmgb1P63158 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Hmgb1P63158 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Hmgb1P63158 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Hmgb1P63158 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Hmgb1P63158 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Hmgb1P63158 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Hmgb1P63158 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Hmgb1P63158 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Hmgb1P63158 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Hmgb1P63158 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC21■□□□□ 0.95
Hmgb1P63158 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC21■□□□□ 0.95
Hmgb1P63158 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC21■□□□□ 0.95
Hmgb1P63158 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC21■□□□□ 0.95
Hmgb1P63158 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC21■□□□□ 0.95
Hmgb1P63158 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
Hmgb1P63158 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Hmgb1P63158 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC21■□□□□ 0.95
Hmgb1P63158 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Hmgb1P63158 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC21■□□□□ 0.95
Hmgb1P63158 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Hmgb1P63158 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Hmgb1P63158 Gm18688-201ENSMUST00000204695 1859 ntBASIC20.99■□□□□ 0.95
Hmgb1P63158 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Hmgb1P63158 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Hmgb1P63158 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Hmgb1P63158 AC140930.3-201ENSMUST00000222935 274 ntBASIC20.99■□□□□ 0.95
Hmgb1P63158 Gm5784-201ENSMUST00000179344 2478 ntBASIC20.99■□□□□ 0.95
Hmgb1P63158 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC20.98■□□□□ 0.95
Hmgb1P63158 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Hmgb1P63158 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Hmgb1P63158 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Hmgb1P63158 Dapk1-207ENSMUST00000226059 5009 ntBASIC20.98■□□□□ 0.95
Hmgb1P63158 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Hmgb1P63158 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Hmgb1P63158 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Hmgb1P63158 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Hmgb1P63158 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Hmgb1P63158 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC20.98■□□□□ 0.95
Hmgb1P63158 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Hmgb1P63158 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC20.98■□□□□ 0.95
Hmgb1P63158 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC20.97■□□□□ 0.95
Hmgb1P63158 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Hmgb1P63158 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
Hmgb1P63158 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Hmgb1P63158 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Hmgb1P63158 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Hmgb1P63158 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Hmgb1P63158 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Hmgb1P63158 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Hmgb1P63158 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Hmgb1P63158 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC20.97■□□□□ 0.95
Hmgb1P63158 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Hmgb1P63158 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms