Protein–RNA interactions for Protein: P39038

Cdh4, Cadherin-4, mousemouse

Predictions only

Length 913 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh4P39038 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cdh4P39038 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Cdh4P39038 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Cdh4P39038 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cdh4P39038 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Cdh4P39038 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cdh4P39038 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Cdh4P39038 Gm14281-201ENSMUST00000121700 1294 ntBASIC18.34■□□□□ 0.53
Cdh4P39038 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cdh4P39038 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Cdh4P39038 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Cdh4P39038 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.53
Cdh4P39038 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Cdh4P39038 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Cdh4P39038 Gm20100-201ENSMUST00000209418 2272 ntBASIC18.33■□□□□ 0.53
Cdh4P39038 Gm10129-202ENSMUST00000193100 1316 ntBASIC18.33■□□□□ 0.53
Cdh4P39038 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Cdh4P39038 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Cdh4P39038 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Cdh4P39038 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Cdh4P39038 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Cdh4P39038 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC18.33■□□□□ 0.52
Cdh4P39038 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
Cdh4P39038 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Cdh4P39038 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Cdh4P39038 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Cdh4P39038 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Cdh4P39038 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Cdh4P39038 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Cdh4P39038 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Cdh4P39038 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Cdh4P39038 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC18.33■□□□□ 0.52
Cdh4P39038 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Cdh4P39038 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Cdh4P39038 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Cdh4P39038 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Cdh4P39038 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Cdh4P39038 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cdh4P39038 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC18.32■□□□□ 0.52
Cdh4P39038 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cdh4P39038 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cdh4P39038 Gm5874-201ENSMUST00000096101 508 ntBASIC18.32■□□□□ 0.52
Cdh4P39038 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cdh4P39038 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Cdh4P39038 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cdh4P39038 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cdh4P39038 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC18.31■□□□□ 0.52
Cdh4P39038 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
Cdh4P39038 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Cdh4P39038 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cdh4P39038 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Cdh4P39038 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cdh4P39038 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Cdh4P39038 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cdh4P39038 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Cdh4P39038 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cdh4P39038 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cdh4P39038 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Cdh4P39038 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC18.31■□□□□ 0.52
Cdh4P39038 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cdh4P39038 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cdh4P39038 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cdh4P39038 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cdh4P39038 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cdh4P39038 Gm8495-201ENSMUST00000188740 694 ntBASIC18.3■□□□□ 0.52
Cdh4P39038 AC099934.2-201ENSMUST00000196389 70 ntBASIC18.3■□□□□ 0.52
Cdh4P39038 AC156953.1-201ENSMUST00000196953 70 ntBASIC18.3■□□□□ 0.52
Cdh4P39038 AC157822.2-201ENSMUST00000200291 70 ntBASIC18.3■□□□□ 0.52
Cdh4P39038 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cdh4P39038 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC18.3■□□□□ 0.52
Cdh4P39038 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Cdh4P39038 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cdh4P39038 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Cdh4P39038 Gm9988-201ENSMUST00000069786 435 ntBASIC18.29■□□□□ 0.52
Cdh4P39038 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cdh4P39038 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
Cdh4P39038 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Cdh4P39038 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cdh4P39038 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Cdh4P39038 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cdh4P39038 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC18.28■□□□□ 0.52
Cdh4P39038 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Cdh4P39038 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC18.28■□□□□ 0.52
Cdh4P39038 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC18.28■□□□□ 0.52
Cdh4P39038 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cdh4P39038 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cdh4P39038 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cdh4P39038 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cdh4P39038 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cdh4P39038 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Cdh4P39038 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Cdh4P39038 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cdh4P39038 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Cdh4P39038 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Cdh4P39038 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cdh4P39038 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC18.27■□□□□ 0.51
Cdh4P39038 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
Cdh4P39038 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Cdh4P39038 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
Cdh4P39038 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms