Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RaraP11416 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RaraP11416 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RaraP11416 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
RaraP11416 Gm10571-201ENSMUST00000097869 1638 ntBASIC20.75■□□□□ 0.91
RaraP11416 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC20.75■□□□□ 0.91
RaraP11416 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RaraP11416 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RaraP11416 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC20.75■□□□□ 0.91
RaraP11416 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
RaraP11416 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RaraP11416 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
RaraP11416 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
RaraP11416 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RaraP11416 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RaraP11416 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RaraP11416 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RaraP11416 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
RaraP11416 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
RaraP11416 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
RaraP11416 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
RaraP11416 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
RaraP11416 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
RaraP11416 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
RaraP11416 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC20.74■□□□□ 0.91
RaraP11416 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC20.74■□□□□ 0.91
RaraP11416 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC20.74■□□□□ 0.91
RaraP11416 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
RaraP11416 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
RaraP11416 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC20.74■□□□□ 0.91
RaraP11416 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RaraP11416 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RaraP11416 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC20.74■□□□□ 0.91
RaraP11416 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
RaraP11416 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
RaraP11416 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RaraP11416 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RaraP11416 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RaraP11416 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
RaraP11416 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
RaraP11416 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RaraP11416 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RaraP11416 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RaraP11416 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
RaraP11416 Gm9847-201ENSMUST00000052528 599 ntBASIC20.73■□□□□ 0.91
RaraP11416 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
RaraP11416 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RaraP11416 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RaraP11416 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RaraP11416 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
RaraP11416 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
RaraP11416 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
RaraP11416 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC20.72■□□□□ 0.91
RaraP11416 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC20.72■□□□□ 0.91
RaraP11416 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RaraP11416 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RaraP11416 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RaraP11416 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RaraP11416 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
RaraP11416 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RaraP11416 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RaraP11416 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RaraP11416 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RaraP11416 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
RaraP11416 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RaraP11416 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RaraP11416 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
RaraP11416 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RaraP11416 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RaraP11416 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
RaraP11416 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
RaraP11416 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RaraP11416 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
RaraP11416 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
RaraP11416 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
RaraP11416 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
RaraP11416 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
RaraP11416 Gm5576-201ENSMUST00000075809 1236 ntBASIC20.7■□□□□ 0.9
RaraP11416 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
RaraP11416 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
RaraP11416 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
RaraP11416 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RaraP11416 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RaraP11416 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RaraP11416 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
RaraP11416 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
RaraP11416 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RaraP11416 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
RaraP11416 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RaraP11416 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RaraP11416 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RaraP11416 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RaraP11416 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RaraP11416 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RaraP11416 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC20.69■□□□□ 0.9
RaraP11416 Spcs1-204ENSMUST00000226782 949 ntBASIC20.69■□□□□ 0.9
RaraP11416 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RaraP11416 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RaraP11416 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
RaraP11416 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms