Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Gm42642-201ENSMUST00000200683 355 ntBASIC21.52■■□□□ 1.04
Pcdha4O88689 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Pcdha4O88689 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC21.52■■□□□ 1.04
Pcdha4O88689 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
Pcdha4O88689 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC21.52■■□□□ 1.03
Pcdha4O88689 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
Pcdha4O88689 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Pcdha4O88689 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Pcdha4O88689 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Pcdha4O88689 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Pcdha4O88689 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Pcdha4O88689 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
Pcdha4O88689 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC21.51■■□□□ 1.03
Pcdha4O88689 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Pcdha4O88689 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC21.51■■□□□ 1.03
Pcdha4O88689 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Pcdha4O88689 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Pcdha4O88689 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC21.5■■□□□ 1.03
Pcdha4O88689 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Pcdha4O88689 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Pcdha4O88689 Gm13234-201ENSMUST00000120010 747 ntBASIC21.5■■□□□ 1.03
Pcdha4O88689 Gm7860-201ENSMUST00000121190 879 ntBASIC21.5■■□□□ 1.03
Pcdha4O88689 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Pcdha4O88689 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC21.5■■□□□ 1.03
Pcdha4O88689 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Pcdha4O88689 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Pcdha4O88689 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
Pcdha4O88689 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Pcdha4O88689 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Pcdha4O88689 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Pcdha4O88689 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
Pcdha4O88689 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC21.49■■□□□ 1.03
Pcdha4O88689 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Pcdha4O88689 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Pcdha4O88689 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Pcdha4O88689 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC21.48■■□□□ 1.03
Pcdha4O88689 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Pcdha4O88689 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Pcdha4O88689 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC21.48■■□□□ 1.03
Pcdha4O88689 Gm38205-201ENSMUST00000192243 258 ntBASIC21.48■■□□□ 1.03
Pcdha4O88689 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Pcdha4O88689 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
Pcdha4O88689 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Pcdha4O88689 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Pcdha4O88689 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Pcdha4O88689 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Pcdha4O88689 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Pcdha4O88689 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Pcdha4O88689 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Pcdha4O88689 Gm10033-202ENSMUST00000211874 928 ntBASIC21.47■■□□□ 1.03
Pcdha4O88689 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Pcdha4O88689 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Pcdha4O88689 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Pcdha4O88689 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC21.47■■□□□ 1.03
Pcdha4O88689 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Pcdha4O88689 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Pcdha4O88689 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Pcdha4O88689 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC21.46■■□□□ 1.03
Pcdha4O88689 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC21.46■■□□□ 1.03
Pcdha4O88689 Gm18671-201ENSMUST00000214826 683 ntBASIC21.46■■□□□ 1.03
Pcdha4O88689 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Pcdha4O88689 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Pcdha4O88689 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Pcdha4O88689 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Pcdha4O88689 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
Pcdha4O88689 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Pcdha4O88689 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Pcdha4O88689 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Pcdha4O88689 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Pcdha4O88689 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Pcdha4O88689 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC21.45■■□□□ 1.02
Pcdha4O88689 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Pcdha4O88689 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Pcdha4O88689 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Pcdha4O88689 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Pcdha4O88689 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Pcdha4O88689 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Pcdha4O88689 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC21.44■■□□□ 1.02
Pcdha4O88689 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC21.44■■□□□ 1.02
Pcdha4O88689 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Pcdha4O88689 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Pcdha4O88689 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Pcdha4O88689 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Pcdha4O88689 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Pcdha4O88689 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Pcdha4O88689 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Pcdha4O88689 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Pcdha4O88689 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC21.42■■□□□ 1.02
Pcdha4O88689 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Pcdha4O88689 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
Pcdha4O88689 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC21.42■■□□□ 1.02
Pcdha4O88689 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC21.42■■□□□ 1.02
Pcdha4O88689 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Pcdha4O88689 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Pcdha4O88689 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Pcdha4O88689 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
Pcdha4O88689 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC21.42■■□□□ 1.02
Pcdha4O88689 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Pcdha4O88689 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Pcdha4O88689 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms