Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cops4O88544 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cops4O88544 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cops4O88544 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC17.67■□□□□ 0.42
Cops4O88544 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cops4O88544 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cops4O88544 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cops4O88544 Gm7143-201ENSMUST00000222811 859 ntBASIC17.67■□□□□ 0.42
Cops4O88544 Gm5812-201ENSMUST00000061073 957 ntBASIC17.67■□□□□ 0.42
Cops4O88544 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Cops4O88544 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Cops4O88544 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cops4O88544 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cops4O88544 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
Cops4O88544 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cops4O88544 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Cops4O88544 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cops4O88544 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Cops4O88544 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cops4O88544 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC17.66■□□□□ 0.42
Cops4O88544 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC17.66■□□□□ 0.42
Cops4O88544 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC17.66■□□□□ 0.42
Cops4O88544 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC17.66■□□□□ 0.42
Cops4O88544 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cops4O88544 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cops4O88544 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cops4O88544 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
Cops4O88544 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Cops4O88544 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Cops4O88544 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cops4O88544 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cops4O88544 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cops4O88544 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC17.65■□□□□ 0.42
Cops4O88544 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cops4O88544 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Cops4O88544 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cops4O88544 Gm15546-201ENSMUST00000122095 826 ntBASIC17.65■□□□□ 0.42
Cops4O88544 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cops4O88544 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC17.65■□□□□ 0.42
Cops4O88544 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Cops4O88544 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC17.65■□□□□ 0.42
Cops4O88544 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cops4O88544 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cops4O88544 Gm18688-201ENSMUST00000204695 1859 ntBASIC17.65■□□□□ 0.42
Cops4O88544 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Cops4O88544 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cops4O88544 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Cops4O88544 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC17.64■□□□□ 0.41
Cops4O88544 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cops4O88544 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cops4O88544 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cops4O88544 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cops4O88544 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Cops4O88544 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Cops4O88544 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cops4O88544 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Cops4O88544 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC17.64■□□□□ 0.41
Cops4O88544 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cops4O88544 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Cops4O88544 Rncr4-201ENSMUST00000194541 2234 ntBASIC17.64■□□□□ 0.41
Cops4O88544 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Cops4O88544 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cops4O88544 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Cops4O88544 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cops4O88544 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cops4O88544 Grk6-206ENSMUST00000224995 2971 ntBASIC17.64■□□□□ 0.41
Cops4O88544 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Cops4O88544 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cops4O88544 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cops4O88544 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cops4O88544 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC17.63■□□□□ 0.41
Cops4O88544 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cops4O88544 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Cops4O88544 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC17.63■□□□□ 0.41
Cops4O88544 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cops4O88544 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cops4O88544 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
Cops4O88544 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cops4O88544 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
Cops4O88544 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cops4O88544 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Cops4O88544 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cops4O88544 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cops4O88544 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cops4O88544 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Cops4O88544 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Cops4O88544 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Cops4O88544 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC17.62■□□□□ 0.41
Cops4O88544 AC124603.1-201ENSMUST00000223843 308 ntBASIC17.62■□□□□ 0.41
Cops4O88544 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Cops4O88544 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Cops4O88544 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Cops4O88544 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Cops4O88544 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Cops4O88544 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Cops4O88544 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Cops4O88544 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC17.62■□□□□ 0.41
Cops4O88544 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Cops4O88544 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Cops4O88544 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms