Protein–RNA interactions for Protein: Q9R1N9

Col13a1, Collagen alpha-1(XIII) chain, mousemouse

Predictions only

Length 751 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col13a1Q9R1N9 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Col13a1Q9R1N9 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col13a1Q9R1N9 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col13a1Q9R1N9 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col13a1Q9R1N9 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col13a1Q9R1N9 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col13a1Q9R1N9 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col13a1Q9R1N9 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col13a1Q9R1N9 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col13a1Q9R1N9 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col13a1Q9R1N9 Gm13181-201ENSMUST00000120117 1069 ntBASIC16.35■□□□□ 0.21
Col13a1Q9R1N9 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC16.35■□□□□ 0.21
Col13a1Q9R1N9 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col13a1Q9R1N9 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col13a1Q9R1N9 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Col13a1Q9R1N9 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC16.35■□□□□ 0.21
Col13a1Q9R1N9 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col13a1Q9R1N9 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Col13a1Q9R1N9 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC16.35■□□□□ 0.21
Col13a1Q9R1N9 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col13a1Q9R1N9 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col13a1Q9R1N9 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Col13a1Q9R1N9 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Col13a1Q9R1N9 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col13a1Q9R1N9 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC16.34■□□□□ 0.21
Col13a1Q9R1N9 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Col13a1Q9R1N9 Gm6365-201ENSMUST00000054711 744 ntBASIC16.34■□□□□ 0.21
Col13a1Q9R1N9 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Col13a1Q9R1N9 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col13a1Q9R1N9 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col13a1Q9R1N9 Snhg20-203ENSMUST00000182811 2153 ntBASIC16.34■□□□□ 0.21
Col13a1Q9R1N9 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
Col13a1Q9R1N9 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Col13a1Q9R1N9 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Col13a1Q9R1N9 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC16.33■□□□□ 0.2
Col13a1Q9R1N9 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col13a1Q9R1N9 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
Col13a1Q9R1N9 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col13a1Q9R1N9 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Col13a1Q9R1N9 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col13a1Q9R1N9 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
Col13a1Q9R1N9 Gm13836-201ENSMUST00000121159 501 ntBASIC16.32■□□□□ 0.2
Col13a1Q9R1N9 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Col13a1Q9R1N9 Gm37856-201ENSMUST00000191634 999 ntBASIC16.32■□□□□ 0.2
Col13a1Q9R1N9 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col13a1Q9R1N9 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col13a1Q9R1N9 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col13a1Q9R1N9 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col13a1Q9R1N9 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col13a1Q9R1N9 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Col13a1Q9R1N9 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col13a1Q9R1N9 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col13a1Q9R1N9 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col13a1Q9R1N9 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Col13a1Q9R1N9 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Col13a1Q9R1N9 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col13a1Q9R1N9 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Col13a1Q9R1N9 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col13a1Q9R1N9 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC16.31■□□□□ 0.2
Col13a1Q9R1N9 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Col13a1Q9R1N9 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Col13a1Q9R1N9 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col13a1Q9R1N9 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Col13a1Q9R1N9 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Col13a1Q9R1N9 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col13a1Q9R1N9 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Col13a1Q9R1N9 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col13a1Q9R1N9 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col13a1Q9R1N9 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Col13a1Q9R1N9 Gm29241-201ENSMUST00000189260 1096 ntBASIC16.3■□□□□ 0.2
Col13a1Q9R1N9 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col13a1Q9R1N9 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC16.3■□□□□ 0.2
Col13a1Q9R1N9 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col13a1Q9R1N9 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Col13a1Q9R1N9 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col13a1Q9R1N9 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col13a1Q9R1N9 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col13a1Q9R1N9 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Col13a1Q9R1N9 Hsf1-207ENSMUST00000228371 2102 ntBASIC16.3■□□□□ 0.2
Col13a1Q9R1N9 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col13a1Q9R1N9 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Col13a1Q9R1N9 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col13a1Q9R1N9 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col13a1Q9R1N9 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col13a1Q9R1N9 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col13a1Q9R1N9 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col13a1Q9R1N9 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col13a1Q9R1N9 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col13a1Q9R1N9 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col13a1Q9R1N9 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC16.29■□□□□ 0.2
Col13a1Q9R1N9 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC16.29■□□□□ 0.2
Col13a1Q9R1N9 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col13a1Q9R1N9 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col13a1Q9R1N9 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col13a1Q9R1N9 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col13a1Q9R1N9 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col13a1Q9R1N9 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
Col13a1Q9R1N9 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Col13a1Q9R1N9 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC16.28■□□□□ 0.2
Col13a1Q9R1N9 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms