Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cpsf3Q9QXK7 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cpsf3Q9QXK7 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cpsf3Q9QXK7 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Cpsf3Q9QXK7 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC20.78■□□□□ 0.92
Cpsf3Q9QXK7 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cpsf3Q9QXK7 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cpsf3Q9QXK7 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC20.77■□□□□ 0.92
Cpsf3Q9QXK7 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
Cpsf3Q9QXK7 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cpsf3Q9QXK7 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cpsf3Q9QXK7 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cpsf3Q9QXK7 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cpsf3Q9QXK7 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cpsf3Q9QXK7 Reep4-203ENSMUST00000226563 1444 ntBASIC20.77■□□□□ 0.91
Cpsf3Q9QXK7 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Cpsf3Q9QXK7 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cpsf3Q9QXK7 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cpsf3Q9QXK7 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cpsf3Q9QXK7 Gm10033-202ENSMUST00000211874 928 ntBASIC20.76■□□□□ 0.91
Cpsf3Q9QXK7 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Cpsf3Q9QXK7 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cpsf3Q9QXK7 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Cpsf3Q9QXK7 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cpsf3Q9QXK7 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Cpsf3Q9QXK7 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Cpsf3Q9QXK7 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cpsf3Q9QXK7 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC20.75■□□□□ 0.91
Cpsf3Q9QXK7 Gm26571-201ENSMUST00000181399 666 ntBASIC20.75■□□□□ 0.91
Cpsf3Q9QXK7 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cpsf3Q9QXK7 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Cpsf3Q9QXK7 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cpsf3Q9QXK7 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Cpsf3Q9QXK7 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Cpsf3Q9QXK7 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cpsf3Q9QXK7 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cpsf3Q9QXK7 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
Cpsf3Q9QXK7 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC20.74■□□□□ 0.91
Cpsf3Q9QXK7 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Cpsf3Q9QXK7 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC20.74■□□□□ 0.91
Cpsf3Q9QXK7 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC20.74■□□□□ 0.91
Cpsf3Q9QXK7 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cpsf3Q9QXK7 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cpsf3Q9QXK7 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cpsf3Q9QXK7 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cpsf3Q9QXK7 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cpsf3Q9QXK7 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cpsf3Q9QXK7 Gm10849-201ENSMUST00000100397 618 ntBASIC20.73■□□□□ 0.91
Cpsf3Q9QXK7 Gm42778-201ENSMUST00000199644 553 ntBASIC20.73■□□□□ 0.91
Cpsf3Q9QXK7 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Cpsf3Q9QXK7 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cpsf3Q9QXK7 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cpsf3Q9QXK7 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cpsf3Q9QXK7 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Cpsf3Q9QXK7 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cpsf3Q9QXK7 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cpsf3Q9QXK7 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cpsf3Q9QXK7 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC20.72■□□□□ 0.91
Cpsf3Q9QXK7 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Cpsf3Q9QXK7 Gm13234-201ENSMUST00000120010 747 ntBASIC20.72■□□□□ 0.91
Cpsf3Q9QXK7 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Cpsf3Q9QXK7 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Cpsf3Q9QXK7 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Cpsf3Q9QXK7 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Cpsf3Q9QXK7 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Cpsf3Q9QXK7 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Cpsf3Q9QXK7 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cpsf3Q9QXK7 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Cpsf3Q9QXK7 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cpsf3Q9QXK7 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cpsf3Q9QXK7 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC20.72■□□□□ 0.91
Cpsf3Q9QXK7 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC20.72■□□□□ 0.91
Cpsf3Q9QXK7 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cpsf3Q9QXK7 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC20.71■□□□□ 0.91
Cpsf3Q9QXK7 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC20.71■□□□□ 0.91
Cpsf3Q9QXK7 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC20.71■□□□□ 0.91
Cpsf3Q9QXK7 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cpsf3Q9QXK7 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cpsf3Q9QXK7 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Cpsf3Q9QXK7 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Cpsf3Q9QXK7 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC20.71■□□□□ 0.91
Cpsf3Q9QXK7 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cpsf3Q9QXK7 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Cpsf3Q9QXK7 Gm32699-201ENSMUST00000221728 1988 ntBASIC20.71■□□□□ 0.91
Cpsf3Q9QXK7 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cpsf3Q9QXK7 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cpsf3Q9QXK7 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cpsf3Q9QXK7 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cpsf3Q9QXK7 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cpsf3Q9QXK7 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.91
Cpsf3Q9QXK7 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cpsf3Q9QXK7 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Cpsf3Q9QXK7 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cpsf3Q9QXK7 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Cpsf3Q9QXK7 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cpsf3Q9QXK7 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC20.7■□□□□ 0.9
Cpsf3Q9QXK7 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cpsf3Q9QXK7 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Cpsf3Q9QXK7 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC20.69■□□□□ 0.9
Cpsf3Q9QXK7 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 16.1 ms