Protein–RNA interactions for Protein: Q9JKX8

Upk3a, Uroplakin-3a, mousemouse

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upk3aQ9JKX8 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Upk3aQ9JKX8 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Upk3aQ9JKX8 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Upk3aQ9JKX8 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC18.64■□□□□ 0.58
Upk3aQ9JKX8 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
Upk3aQ9JKX8 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Upk3aQ9JKX8 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
Upk3aQ9JKX8 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Upk3aQ9JKX8 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Upk3aQ9JKX8 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Upk3aQ9JKX8 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Upk3aQ9JKX8 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC18.64■□□□□ 0.57
Upk3aQ9JKX8 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC18.64■□□□□ 0.57
Upk3aQ9JKX8 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC18.64■□□□□ 0.57
Upk3aQ9JKX8 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Upk3aQ9JKX8 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC18.64■□□□□ 0.57
Upk3aQ9JKX8 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
Upk3aQ9JKX8 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Upk3aQ9JKX8 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Upk3aQ9JKX8 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Upk3aQ9JKX8 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Upk3aQ9JKX8 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Upk3aQ9JKX8 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Upk3aQ9JKX8 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Upk3aQ9JKX8 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Upk3aQ9JKX8 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC18.63■□□□□ 0.57
Upk3aQ9JKX8 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Upk3aQ9JKX8 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Upk3aQ9JKX8 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Upk3aQ9JKX8 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Upk3aQ9JKX8 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC18.63■□□□□ 0.57
Upk3aQ9JKX8 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Upk3aQ9JKX8 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Upk3aQ9JKX8 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC18.62■□□□□ 0.57
Upk3aQ9JKX8 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Upk3aQ9JKX8 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Upk3aQ9JKX8 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Upk3aQ9JKX8 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upk3aQ9JKX8 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Upk3aQ9JKX8 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Upk3aQ9JKX8 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC18.61■□□□□ 0.57
Upk3aQ9JKX8 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upk3aQ9JKX8 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Upk3aQ9JKX8 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upk3aQ9JKX8 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upk3aQ9JKX8 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC18.61■□□□□ 0.57
Upk3aQ9JKX8 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Upk3aQ9JKX8 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upk3aQ9JKX8 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Upk3aQ9JKX8 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
Upk3aQ9JKX8 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
Upk3aQ9JKX8 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upk3aQ9JKX8 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upk3aQ9JKX8 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
Upk3aQ9JKX8 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upk3aQ9JKX8 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upk3aQ9JKX8 Gm37352-201ENSMUST00000193908 2181 ntBASIC18.6■□□□□ 0.57
Upk3aQ9JKX8 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC18.6■□□□□ 0.57
Upk3aQ9JKX8 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upk3aQ9JKX8 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upk3aQ9JKX8 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upk3aQ9JKX8 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Upk3aQ9JKX8 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC18.6■□□□□ 0.57
Upk3aQ9JKX8 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Upk3aQ9JKX8 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Upk3aQ9JKX8 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Upk3aQ9JKX8 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upk3aQ9JKX8 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upk3aQ9JKX8 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Upk3aQ9JKX8 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Upk3aQ9JKX8 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC18.59■□□□□ 0.57
Upk3aQ9JKX8 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Upk3aQ9JKX8 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC18.59■□□□□ 0.57
Upk3aQ9JKX8 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC18.59■□□□□ 0.57
Upk3aQ9JKX8 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Upk3aQ9JKX8 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upk3aQ9JKX8 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upk3aQ9JKX8 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC18.59■□□□□ 0.57
Upk3aQ9JKX8 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Upk3aQ9JKX8 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upk3aQ9JKX8 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upk3aQ9JKX8 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Upk3aQ9JKX8 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Upk3aQ9JKX8 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Upk3aQ9JKX8 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Upk3aQ9JKX8 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
Upk3aQ9JKX8 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Upk3aQ9JKX8 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC18.58■□□□□ 0.56
Upk3aQ9JKX8 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Upk3aQ9JKX8 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Upk3aQ9JKX8 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Upk3aQ9JKX8 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
Upk3aQ9JKX8 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Upk3aQ9JKX8 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Upk3aQ9JKX8 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC18.58■□□□□ 0.56
Upk3aQ9JKX8 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Upk3aQ9JKX8 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Upk3aQ9JKX8 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upk3aQ9JKX8 Gm10129-202ENSMUST00000193100 1316 ntBASIC18.57■□□□□ 0.56
Upk3aQ9JKX8 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms