Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
Trim54Q9ERP3 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
Trim54Q9ERP3 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim54Q9ERP3 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim54Q9ERP3 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC20.89■□□□□ 0.93
Trim54Q9ERP3 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC20.89■□□□□ 0.93
Trim54Q9ERP3 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC20.89■□□□□ 0.93
Trim54Q9ERP3 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim54Q9ERP3 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim54Q9ERP3 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC20.89■□□□□ 0.93
Trim54Q9ERP3 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim54Q9ERP3 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim54Q9ERP3 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim54Q9ERP3 Mir5133-201ENSMUST00000174955 77 ntBASIC20.88■□□□□ 0.93
Trim54Q9ERP3 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Trim54Q9ERP3 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim54Q9ERP3 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
Trim54Q9ERP3 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Trim54Q9ERP3 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim54Q9ERP3 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Trim54Q9ERP3 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim54Q9ERP3 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC20.87■□□□□ 0.93
Trim54Q9ERP3 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim54Q9ERP3 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim54Q9ERP3 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC20.87■□□□□ 0.93
Trim54Q9ERP3 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Trim54Q9ERP3 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim54Q9ERP3 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Trim54Q9ERP3 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC20.86■□□□□ 0.93
Trim54Q9ERP3 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Trim54Q9ERP3 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim54Q9ERP3 AC152827.1-201ENSMUST00000221143 2189 ntBASIC20.86■□□□□ 0.93
Trim54Q9ERP3 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Trim54Q9ERP3 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim54Q9ERP3 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim54Q9ERP3 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Trim54Q9ERP3 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim54Q9ERP3 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Trim54Q9ERP3 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim54Q9ERP3 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim54Q9ERP3 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Trim54Q9ERP3 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim54Q9ERP3 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
Trim54Q9ERP3 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC20.85■□□□□ 0.93
Trim54Q9ERP3 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Trim54Q9ERP3 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim54Q9ERP3 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
Trim54Q9ERP3 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim54Q9ERP3 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim54Q9ERP3 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim54Q9ERP3 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim54Q9ERP3 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim54Q9ERP3 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim54Q9ERP3 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Trim54Q9ERP3 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim54Q9ERP3 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim54Q9ERP3 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim54Q9ERP3 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Trim54Q9ERP3 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim54Q9ERP3 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim54Q9ERP3 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
Trim54Q9ERP3 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Trim54Q9ERP3 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC20.83■□□□□ 0.93
Trim54Q9ERP3 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC20.83■□□□□ 0.93
Trim54Q9ERP3 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC20.83■□□□□ 0.93
Trim54Q9ERP3 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC20.83■□□□□ 0.93
Trim54Q9ERP3 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
Trim54Q9ERP3 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Trim54Q9ERP3 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim54Q9ERP3 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim54Q9ERP3 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim54Q9ERP3 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim54Q9ERP3 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim54Q9ERP3 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Trim54Q9ERP3 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim54Q9ERP3 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC20.82■□□□□ 0.92
Trim54Q9ERP3 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Trim54Q9ERP3 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC20.82■□□□□ 0.92
Trim54Q9ERP3 Gm6420-201ENSMUST00000193885 723 ntBASIC20.82■□□□□ 0.92
Trim54Q9ERP3 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Trim54Q9ERP3 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim54Q9ERP3 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim54Q9ERP3 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim54Q9ERP3 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim54Q9ERP3 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim54Q9ERP3 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Trim54Q9ERP3 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim54Q9ERP3 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim54Q9ERP3 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC20.8■□□□□ 0.92
Trim54Q9ERP3 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC20.8■□□□□ 0.92
Trim54Q9ERP3 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Trim54Q9ERP3 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Trim54Q9ERP3 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC20.8■□□□□ 0.92
Trim54Q9ERP3 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim54Q9ERP3 Gm12441-201ENSMUST00000121806 588 ntBASIC20.8■□□□□ 0.92
Trim54Q9ERP3 Nespas-201ENSMUST00000143738 1083 ntBASIC20.8■□□□□ 0.92
Trim54Q9ERP3 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Trim54Q9ERP3 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim54Q9ERP3 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Trim54Q9ERP3 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 16 ms