Protein–RNA interactions for Protein: Q9D706

Rpap3, RNA polymerase II-associated protein 3, mousemouse

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpap3Q9D706 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC21.33■■□□□ 1.01
Rpap3Q9D706 Gm42555-201ENSMUST00000199304 1039 ntBASIC21.33■■□□□ 1.01
Rpap3Q9D706 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Rpap3Q9D706 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Rpap3Q9D706 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Rpap3Q9D706 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
Rpap3Q9D706 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Rpap3Q9D706 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC21.32■■□□□ 1
Rpap3Q9D706 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Rpap3Q9D706 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Rpap3Q9D706 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC21.32■■□□□ 1
Rpap3Q9D706 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Rpap3Q9D706 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Rpap3Q9D706 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Rpap3Q9D706 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Rpap3Q9D706 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Rpap3Q9D706 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Rpap3Q9D706 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC21.31■■□□□ 1
Rpap3Q9D706 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Rpap3Q9D706 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC21.31■■□□□ 1
Rpap3Q9D706 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Rpap3Q9D706 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Rpap3Q9D706 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Rpap3Q9D706 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Rpap3Q9D706 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Rpap3Q9D706 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Rpap3Q9D706 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC21.3■■□□□ 1
Rpap3Q9D706 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC21.3■■□□□ 1
Rpap3Q9D706 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Rpap3Q9D706 Gm10655-201ENSMUST00000098658 1397 ntBASIC21.3■■□□□ 1
Rpap3Q9D706 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Rpap3Q9D706 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
Rpap3Q9D706 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC21.3■■□□□ 1
Rpap3Q9D706 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Rpap3Q9D706 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC21.29■■□□□ 1
Rpap3Q9D706 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC21.29■■□□□ 1
Rpap3Q9D706 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Rpap3Q9D706 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC21.29■■□□□ 1
Rpap3Q9D706 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Rpap3Q9D706 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Rpap3Q9D706 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Rpap3Q9D706 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC21.29■■□□□ 1
Rpap3Q9D706 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC21.28■■□□□ 1
Rpap3Q9D706 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Rpap3Q9D706 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC21.28■■□□□ 1
Rpap3Q9D706 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC21.28■■□□□ 1
Rpap3Q9D706 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC21.28■■□□□ 1
Rpap3Q9D706 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC21.28■■□□□ 1
Rpap3Q9D706 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC21.28■■□□□ 1
Rpap3Q9D706 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC21.28■■□□□ 1
Rpap3Q9D706 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC21.28■■□□□ 1
Rpap3Q9D706 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC21.27■■□□□ 1
Rpap3Q9D706 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Rpap3Q9D706 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Rpap3Q9D706 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC21.27■■□□□ 1
Rpap3Q9D706 CT025689.6-201ENSMUST00000224991 1104 ntBASIC21.27■■□□□ 1
Rpap3Q9D706 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Rpap3Q9D706 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
Rpap3Q9D706 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rpap3Q9D706 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rpap3Q9D706 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rpap3Q9D706 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rpap3Q9D706 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Rpap3Q9D706 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC21.26■□□□□ 0.99
Rpap3Q9D706 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rpap3Q9D706 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rpap3Q9D706 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rpap3Q9D706 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rpap3Q9D706 Mir5133-201ENSMUST00000174955 77 ntBASIC21.26■□□□□ 0.99
Rpap3Q9D706 Gm27032-201ENSMUST00000183124 1116 ntBASIC21.26■□□□□ 0.99
Rpap3Q9D706 Gm6420-201ENSMUST00000193885 723 ntBASIC21.26■□□□□ 0.99
Rpap3Q9D706 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC21.26■□□□□ 0.99
Rpap3Q9D706 Spcs1-207ENSMUST00000228767 1008 ntBASIC21.26■□□□□ 0.99
Rpap3Q9D706 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rpap3Q9D706 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Rpap3Q9D706 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Rpap3Q9D706 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rpap3Q9D706 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Rpap3Q9D706 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Rpap3Q9D706 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Rpap3Q9D706 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Rpap3Q9D706 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Rpap3Q9D706 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Rpap3Q9D706 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC21.25■□□□□ 0.99
Rpap3Q9D706 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Rpap3Q9D706 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Rpap3Q9D706 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Rpap3Q9D706 Gm32699-201ENSMUST00000221728 1988 ntBASIC21.25■□□□□ 0.99
Rpap3Q9D706 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC21.25■□□□□ 0.99
Rpap3Q9D706 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rpap3Q9D706 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Rpap3Q9D706 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Rpap3Q9D706 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Rpap3Q9D706 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Rpap3Q9D706 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC21.24■□□□□ 0.99
Rpap3Q9D706 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rpap3Q9D706 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC21.24■□□□□ 0.99
Rpap3Q9D706 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rpap3Q9D706 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rpap3Q9D706 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms