Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Smc1aQ9CU62 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC21.42■■□□□ 1.02
Smc1aQ9CU62 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Smc1aQ9CU62 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Smc1aQ9CU62 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Smc1aQ9CU62 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Smc1aQ9CU62 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC21.42■■□□□ 1.02
Smc1aQ9CU62 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Smc1aQ9CU62 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Smc1aQ9CU62 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Smc1aQ9CU62 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Smc1aQ9CU62 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC21.42■■□□□ 1.02
Smc1aQ9CU62 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Smc1aQ9CU62 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Smc1aQ9CU62 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC21.41■■□□□ 1.02
Smc1aQ9CU62 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Smc1aQ9CU62 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Smc1aQ9CU62 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
Smc1aQ9CU62 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Smc1aQ9CU62 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC21.4■■□□□ 1.02
Smc1aQ9CU62 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Smc1aQ9CU62 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC21.4■■□□□ 1.02
Smc1aQ9CU62 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Smc1aQ9CU62 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Smc1aQ9CU62 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Smc1aQ9CU62 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
Smc1aQ9CU62 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Smc1aQ9CU62 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Smc1aQ9CU62 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Smc1aQ9CU62 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Smc1aQ9CU62 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
Smc1aQ9CU62 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
Smc1aQ9CU62 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
Smc1aQ9CU62 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Smc1aQ9CU62 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC21.39■■□□□ 1.01
Smc1aQ9CU62 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC21.39■■□□□ 1.01
Smc1aQ9CU62 Gm37035-201ENSMUST00000194809 2148 ntBASIC21.39■■□□□ 1.01
Smc1aQ9CU62 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Smc1aQ9CU62 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Smc1aQ9CU62 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
Smc1aQ9CU62 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Smc1aQ9CU62 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Smc1aQ9CU62 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Smc1aQ9CU62 Gm42569-201ENSMUST00000200539 472 ntBASIC21.38■■□□□ 1.01
Smc1aQ9CU62 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC21.38■■□□□ 1.01
Smc1aQ9CU62 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
Smc1aQ9CU62 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Smc1aQ9CU62 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Smc1aQ9CU62 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Smc1aQ9CU62 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Smc1aQ9CU62 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Smc1aQ9CU62 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Smc1aQ9CU62 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Smc1aQ9CU62 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Smc1aQ9CU62 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Smc1aQ9CU62 AC122428.2-201ENSMUST00000216321 1832 ntBASIC21.37■■□□□ 1.01
Smc1aQ9CU62 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Smc1aQ9CU62 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC21.37■■□□□ 1.01
Smc1aQ9CU62 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC21.37■■□□□ 1.01
Smc1aQ9CU62 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC21.37■■□□□ 1.01
Smc1aQ9CU62 Gm40848-201ENSMUST00000221998 324 ntBASIC21.37■■□□□ 1.01
Smc1aQ9CU62 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Smc1aQ9CU62 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Smc1aQ9CU62 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Smc1aQ9CU62 Gm10209-201ENSMUST00000203397 1607 ntBASIC21.37■■□□□ 1.01
Smc1aQ9CU62 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Smc1aQ9CU62 AC099934.2-201ENSMUST00000196389 70 ntBASIC21.36■■□□□ 1.01
Smc1aQ9CU62 AC156953.1-201ENSMUST00000196953 70 ntBASIC21.36■■□□□ 1.01
Smc1aQ9CU62 AC157822.2-201ENSMUST00000200291 70 ntBASIC21.36■■□□□ 1.01
Smc1aQ9CU62 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Smc1aQ9CU62 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Smc1aQ9CU62 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC21.36■■□□□ 1.01
Smc1aQ9CU62 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
Smc1aQ9CU62 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Smc1aQ9CU62 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Smc1aQ9CU62 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Smc1aQ9CU62 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Smc1aQ9CU62 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Smc1aQ9CU62 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC21.35■■□□□ 1.01
Smc1aQ9CU62 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
Smc1aQ9CU62 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Smc1aQ9CU62 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC21.35■■□□□ 1.01
Smc1aQ9CU62 Gm27405-201ENSMUST00000184201 112 ntBASIC21.35■■□□□ 1.01
Smc1aQ9CU62 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC21.35■■□□□ 1.01
Smc1aQ9CU62 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC21.35■■□□□ 1.01
Smc1aQ9CU62 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC21.35■■□□□ 1.01
Smc1aQ9CU62 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
Smc1aQ9CU62 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Smc1aQ9CU62 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Smc1aQ9CU62 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Smc1aQ9CU62 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Smc1aQ9CU62 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Smc1aQ9CU62 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Smc1aQ9CU62 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.01
Smc1aQ9CU62 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC21.34■■□□□ 1.01
Smc1aQ9CU62 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC21.34■■□□□ 1.01
Smc1aQ9CU62 Gm26571-201ENSMUST00000181399 666 ntBASIC21.34■■□□□ 1.01
Smc1aQ9CU62 Gm42642-201ENSMUST00000200683 355 ntBASIC21.34■■□□□ 1.01
Smc1aQ9CU62 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Smc1aQ9CU62 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC21.34■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 41.7 ms