Protein–RNA interactions for Protein: Q99J62

Rfc4, Replication factor C subunit 4, mousemouse

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfc4Q99J62 AC135637.1-201ENSMUST00000227750 365 ntBASIC22.31■■□□□ 1.16
Rfc4Q99J62 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Rfc4Q99J62 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
Rfc4Q99J62 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Rfc4Q99J62 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Rfc4Q99J62 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
Rfc4Q99J62 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Rfc4Q99J62 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC22.31■■□□□ 1.16
Rfc4Q99J62 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Rfc4Q99J62 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Rfc4Q99J62 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Rfc4Q99J62 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Rfc4Q99J62 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Rfc4Q99J62 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Rfc4Q99J62 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Rfc4Q99J62 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Rfc4Q99J62 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Rfc4Q99J62 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Rfc4Q99J62 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Rfc4Q99J62 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
Rfc4Q99J62 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Rfc4Q99J62 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Rfc4Q99J62 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Rfc4Q99J62 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC22.29■■□□□ 1.16
Rfc4Q99J62 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC22.29■■□□□ 1.16
Rfc4Q99J62 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC22.29■■□□□ 1.16
Rfc4Q99J62 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Rfc4Q99J62 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Rfc4Q99J62 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Rfc4Q99J62 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Rfc4Q99J62 AA386476-201ENSMUST00000098781 1665 ntBASIC22.28■■□□□ 1.16
Rfc4Q99J62 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Rfc4Q99J62 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Rfc4Q99J62 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Rfc4Q99J62 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC22.28■■□□□ 1.16
Rfc4Q99J62 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
Rfc4Q99J62 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Rfc4Q99J62 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Rfc4Q99J62 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Rfc4Q99J62 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Rfc4Q99J62 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Rfc4Q99J62 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC22.27■■□□□ 1.16
Rfc4Q99J62 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC22.27■■□□□ 1.16
Rfc4Q99J62 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Rfc4Q99J62 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
Rfc4Q99J62 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Rfc4Q99J62 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC22.27■■□□□ 1.16
Rfc4Q99J62 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Rfc4Q99J62 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
Rfc4Q99J62 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC22.27■■□□□ 1.15
Rfc4Q99J62 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Rfc4Q99J62 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
Rfc4Q99J62 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
Rfc4Q99J62 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Rfc4Q99J62 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
Rfc4Q99J62 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
Rfc4Q99J62 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Rfc4Q99J62 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Rfc4Q99J62 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Rfc4Q99J62 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Rfc4Q99J62 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Rfc4Q99J62 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
Rfc4Q99J62 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Rfc4Q99J62 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Rfc4Q99J62 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Rfc4Q99J62 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Rfc4Q99J62 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
Rfc4Q99J62 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Rfc4Q99J62 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC22.25■■□□□ 1.15
Rfc4Q99J62 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Rfc4Q99J62 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC22.25■■□□□ 1.15
Rfc4Q99J62 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Rfc4Q99J62 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC22.25■■□□□ 1.15
Rfc4Q99J62 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Rfc4Q99J62 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Rfc4Q99J62 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Rfc4Q99J62 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
Rfc4Q99J62 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
Rfc4Q99J62 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Rfc4Q99J62 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC22.24■■□□□ 1.15
Rfc4Q99J62 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
Rfc4Q99J62 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC22.24■■□□□ 1.15
Rfc4Q99J62 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
Rfc4Q99J62 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC22.24■■□□□ 1.15
Rfc4Q99J62 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC22.24■■□□□ 1.15
Rfc4Q99J62 Gm37856-201ENSMUST00000191634 999 ntBASIC22.24■■□□□ 1.15
Rfc4Q99J62 AC122769.4-201ENSMUST00000228166 901 ntBASIC22.24■■□□□ 1.15
Rfc4Q99J62 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Rfc4Q99J62 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Rfc4Q99J62 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Rfc4Q99J62 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Rfc4Q99J62 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Rfc4Q99J62 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC22.23■■□□□ 1.15
Rfc4Q99J62 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC22.23■■□□□ 1.15
Rfc4Q99J62 Gm10812-201ENSMUST00000099864 546 ntBASIC22.23■■□□□ 1.15
Rfc4Q99J62 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Rfc4Q99J62 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Rfc4Q99J62 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Rfc4Q99J62 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
Rfc4Q99J62 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms