Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
Ushbp1Q8R370 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Ushbp1Q8R370 Gm10616-201ENSMUST00000205285 2127 ntBASIC21.64■■□□□ 1.05
Ushbp1Q8R370 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Ushbp1Q8R370 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
Ushbp1Q8R370 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC21.63■■□□□ 1.05
Ushbp1Q8R370 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC21.63■■□□□ 1.05
Ushbp1Q8R370 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Ushbp1Q8R370 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
Ushbp1Q8R370 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC21.62■■□□□ 1.05
Ushbp1Q8R370 Gm37179-201ENSMUST00000194862 823 ntBASIC21.62■■□□□ 1.05
Ushbp1Q8R370 AC154266.1-201ENSMUST00000223190 503 ntBASIC21.62■■□□□ 1.05
Ushbp1Q8R370 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ushbp1Q8R370 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ushbp1Q8R370 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Ushbp1Q8R370 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC21.62■■□□□ 1.05
Ushbp1Q8R370 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Ushbp1Q8R370 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC21.62■■□□□ 1.05
Ushbp1Q8R370 Gm10849-201ENSMUST00000100397 618 ntBASIC21.61■■□□□ 1.05
Ushbp1Q8R370 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
Ushbp1Q8R370 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ushbp1Q8R370 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Ushbp1Q8R370 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC21.61■■□□□ 1.05
Ushbp1Q8R370 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ushbp1Q8R370 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ushbp1Q8R370 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ushbp1Q8R370 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ushbp1Q8R370 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Ushbp1Q8R370 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
Ushbp1Q8R370 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ushbp1Q8R370 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC21.6■■□□□ 1.05
Ushbp1Q8R370 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC21.6■■□□□ 1.05
Ushbp1Q8R370 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ushbp1Q8R370 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ushbp1Q8R370 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ushbp1Q8R370 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ushbp1Q8R370 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ushbp1Q8R370 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ushbp1Q8R370 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ushbp1Q8R370 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ushbp1Q8R370 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ushbp1Q8R370 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ushbp1Q8R370 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Ushbp1Q8R370 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Ushbp1Q8R370 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ushbp1Q8R370 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ushbp1Q8R370 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ushbp1Q8R370 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
Ushbp1Q8R370 Gm10129-202ENSMUST00000193100 1316 ntBASIC21.58■■□□□ 1.05
Ushbp1Q8R370 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
Ushbp1Q8R370 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Ushbp1Q8R370 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Ushbp1Q8R370 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Ushbp1Q8R370 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Ushbp1Q8R370 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Ushbp1Q8R370 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
Ushbp1Q8R370 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC21.57■■□□□ 1.04
Ushbp1Q8R370 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Ushbp1Q8R370 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ushbp1Q8R370 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
Ushbp1Q8R370 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ushbp1Q8R370 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ushbp1Q8R370 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ushbp1Q8R370 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ushbp1Q8R370 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ushbp1Q8R370 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ushbp1Q8R370 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC21.56■■□□□ 1.04
Ushbp1Q8R370 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC21.56■■□□□ 1.04
Ushbp1Q8R370 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ushbp1Q8R370 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ushbp1Q8R370 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ushbp1Q8R370 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC21.55■■□□□ 1.04
Ushbp1Q8R370 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Ushbp1Q8R370 Gm27011-201ENSMUST00000182352 972 ntBASIC21.55■■□□□ 1.04
Ushbp1Q8R370 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC21.55■■□□□ 1.04
Ushbp1Q8R370 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC21.55■■□□□ 1.04
Ushbp1Q8R370 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
Ushbp1Q8R370 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ushbp1Q8R370 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC21.55■■□□□ 1.04
Ushbp1Q8R370 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ushbp1Q8R370 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ushbp1Q8R370 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ushbp1Q8R370 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC21.55■■□□□ 1.04
Ushbp1Q8R370 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ushbp1Q8R370 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ushbp1Q8R370 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ushbp1Q8R370 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Ushbp1Q8R370 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC21.54■■□□□ 1.04
Ushbp1Q8R370 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ushbp1Q8R370 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ushbp1Q8R370 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Ushbp1Q8R370 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ushbp1Q8R370 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ushbp1Q8R370 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Ushbp1Q8R370 CT025689.6-201ENSMUST00000224991 1104 ntBASIC21.53■■□□□ 1.04
Ushbp1Q8R370 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ushbp1Q8R370 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
Ushbp1Q8R370 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ushbp1Q8R370 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Ushbp1Q8R370 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 17.1 ms