Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Brf1Q8CFK2 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
Brf1Q8CFK2 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Brf1Q8CFK2 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Brf1Q8CFK2 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.32
Brf1Q8CFK2 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Brf1Q8CFK2 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Brf1Q8CFK2 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Brf1Q8CFK2 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Brf1Q8CFK2 Gm32699-201ENSMUST00000221728 1988 ntBASIC23.32■■□□□ 1.32
Brf1Q8CFK2 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
Brf1Q8CFK2 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Brf1Q8CFK2 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Brf1Q8CFK2 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Brf1Q8CFK2 Gm45640-201ENSMUST00000210665 1896 ntBASIC23.31■■□□□ 1.32
Brf1Q8CFK2 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC23.31■■□□□ 1.32
Brf1Q8CFK2 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
Brf1Q8CFK2 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC23.31■■□□□ 1.32
Brf1Q8CFK2 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
Brf1Q8CFK2 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Brf1Q8CFK2 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Brf1Q8CFK2 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Brf1Q8CFK2 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Brf1Q8CFK2 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Brf1Q8CFK2 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Brf1Q8CFK2 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Brf1Q8CFK2 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Brf1Q8CFK2 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC23.3■■□□□ 1.32
Brf1Q8CFK2 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
Brf1Q8CFK2 Gm27801-201ENSMUST00000184174 223 ntBASIC23.3■■□□□ 1.32
Brf1Q8CFK2 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Brf1Q8CFK2 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Brf1Q8CFK2 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Brf1Q8CFK2 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Brf1Q8CFK2 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Brf1Q8CFK2 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
Brf1Q8CFK2 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Brf1Q8CFK2 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Brf1Q8CFK2 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Brf1Q8CFK2 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Brf1Q8CFK2 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Brf1Q8CFK2 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Brf1Q8CFK2 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Brf1Q8CFK2 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Brf1Q8CFK2 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
Brf1Q8CFK2 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC23.28■■□□□ 1.32
Brf1Q8CFK2 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Brf1Q8CFK2 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
Brf1Q8CFK2 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Brf1Q8CFK2 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC23.27■■□□□ 1.32
Brf1Q8CFK2 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC23.27■■□□□ 1.32
Brf1Q8CFK2 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.31
Brf1Q8CFK2 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Brf1Q8CFK2 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Brf1Q8CFK2 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Brf1Q8CFK2 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC23.26■■□□□ 1.31
Brf1Q8CFK2 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Brf1Q8CFK2 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
Brf1Q8CFK2 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
Brf1Q8CFK2 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Brf1Q8CFK2 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Brf1Q8CFK2 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Brf1Q8CFK2 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Brf1Q8CFK2 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
Brf1Q8CFK2 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
Brf1Q8CFK2 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Brf1Q8CFK2 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC23.25■■□□□ 1.31
Brf1Q8CFK2 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC23.25■■□□□ 1.31
Brf1Q8CFK2 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Brf1Q8CFK2 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC23.25■■□□□ 1.31
Brf1Q8CFK2 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC23.25■■□□□ 1.31
Brf1Q8CFK2 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC23.25■■□□□ 1.31
Brf1Q8CFK2 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC23.25■■□□□ 1.31
Brf1Q8CFK2 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Brf1Q8CFK2 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Brf1Q8CFK2 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC23.25■■□□□ 1.31
Brf1Q8CFK2 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
Brf1Q8CFK2 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Brf1Q8CFK2 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
Brf1Q8CFK2 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Brf1Q8CFK2 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC23.24■■□□□ 1.31
Brf1Q8CFK2 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC23.24■■□□□ 1.31
Brf1Q8CFK2 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC23.24■■□□□ 1.31
Brf1Q8CFK2 CT030146.1-201ENSMUST00000220919 217 ntBASIC23.24■■□□□ 1.31
Brf1Q8CFK2 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Brf1Q8CFK2 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC23.24■■□□□ 1.31
Brf1Q8CFK2 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Brf1Q8CFK2 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Brf1Q8CFK2 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Brf1Q8CFK2 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
Brf1Q8CFK2 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Brf1Q8CFK2 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
Brf1Q8CFK2 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
Brf1Q8CFK2 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Brf1Q8CFK2 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Brf1Q8CFK2 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
Brf1Q8CFK2 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
Brf1Q8CFK2 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC23.23■■□□□ 1.31
Brf1Q8CFK2 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC23.23■■□□□ 1.31
Brf1Q8CFK2 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
Retrieved 100 of 76,532 protein–RNA pairs in 19.7 ms