Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Usp40Q8BWR4 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Usp40Q8BWR4 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
Usp40Q8BWR4 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC26.64■■□□□ 1.86
Usp40Q8BWR4 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC26.64■■□□□ 1.86
Usp40Q8BWR4 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
Usp40Q8BWR4 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
Usp40Q8BWR4 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
Usp40Q8BWR4 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
Usp40Q8BWR4 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC26.63■■□□□ 1.85
Usp40Q8BWR4 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Usp40Q8BWR4 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Usp40Q8BWR4 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Usp40Q8BWR4 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC26.63■■□□□ 1.85
Usp40Q8BWR4 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC26.63■■□□□ 1.85
Usp40Q8BWR4 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC26.63■■□□□ 1.85
Usp40Q8BWR4 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Usp40Q8BWR4 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Usp40Q8BWR4 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Usp40Q8BWR4 Gm43006-201ENSMUST00000197702 1602 ntBASIC26.62■■□□□ 1.85
Usp40Q8BWR4 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Usp40Q8BWR4 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Usp40Q8BWR4 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Usp40Q8BWR4 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Usp40Q8BWR4 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC26.62■■□□□ 1.85
Usp40Q8BWR4 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC26.62■■□□□ 1.85
Usp40Q8BWR4 Gm3807-201ENSMUST00000193520 1168 ntBASIC26.62■■□□□ 1.85
Usp40Q8BWR4 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Usp40Q8BWR4 Gm43859-201ENSMUST00000200075 1412 ntBASIC26.62■■□□□ 1.85
Usp40Q8BWR4 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Usp40Q8BWR4 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Usp40Q8BWR4 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC26.61■■□□□ 1.85
Usp40Q8BWR4 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC26.61■■□□□ 1.85
Usp40Q8BWR4 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC26.61■■□□□ 1.85
Usp40Q8BWR4 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC26.61■■□□□ 1.85
Usp40Q8BWR4 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC26.61■■□□□ 1.85
Usp40Q8BWR4 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC26.61■■□□□ 1.85
Usp40Q8BWR4 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
Usp40Q8BWR4 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC26.61■■□□□ 1.85
Usp40Q8BWR4 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC26.61■■□□□ 1.85
Usp40Q8BWR4 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC26.6■■□□□ 1.85
Usp40Q8BWR4 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Usp40Q8BWR4 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Usp40Q8BWR4 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC26.6■■□□□ 1.85
Usp40Q8BWR4 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
Usp40Q8BWR4 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
Usp40Q8BWR4 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Usp40Q8BWR4 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Usp40Q8BWR4 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Usp40Q8BWR4 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
Usp40Q8BWR4 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Usp40Q8BWR4 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC26.6■■□□□ 1.85
Usp40Q8BWR4 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Usp40Q8BWR4 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC26.6■■□□□ 1.85
Usp40Q8BWR4 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Usp40Q8BWR4 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Usp40Q8BWR4 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC26.59■■□□□ 1.85
Usp40Q8BWR4 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Usp40Q8BWR4 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC26.59■■□□□ 1.85
Usp40Q8BWR4 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC26.59■■□□□ 1.85
Usp40Q8BWR4 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Usp40Q8BWR4 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC26.59■■□□□ 1.85
Usp40Q8BWR4 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC26.59■■□□□ 1.85
Usp40Q8BWR4 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC26.59■■□□□ 1.85
Usp40Q8BWR4 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Usp40Q8BWR4 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
Usp40Q8BWR4 Gm32699-201ENSMUST00000221728 1988 ntBASIC26.58■■□□□ 1.85
Usp40Q8BWR4 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Usp40Q8BWR4 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Usp40Q8BWR4 Gm10653-202ENSMUST00000139570 835 ntBASIC26.58■■□□□ 1.85
Usp40Q8BWR4 Gm27032-201ENSMUST00000183124 1116 ntBASIC26.58■■□□□ 1.85
Usp40Q8BWR4 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC26.58■■□□□ 1.85
Usp40Q8BWR4 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.84
Usp40Q8BWR4 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Usp40Q8BWR4 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Usp40Q8BWR4 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Usp40Q8BWR4 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Usp40Q8BWR4 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Usp40Q8BWR4 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Usp40Q8BWR4 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Usp40Q8BWR4 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Usp40Q8BWR4 Gm6211-202ENSMUST00000167849 925 ntBASIC26.57■■□□□ 1.84
Usp40Q8BWR4 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC26.57■■□□□ 1.84
Usp40Q8BWR4 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC26.57■■□□□ 1.84
Usp40Q8BWR4 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Usp40Q8BWR4 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Usp40Q8BWR4 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Usp40Q8BWR4 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Usp40Q8BWR4 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Usp40Q8BWR4 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC26.56■■□□□ 1.84
Usp40Q8BWR4 Gm12527-201ENSMUST00000117967 564 ntBASIC26.56■■□□□ 1.84
Usp40Q8BWR4 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC26.56■■□□□ 1.84
Usp40Q8BWR4 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC26.56■■□□□ 1.84
Usp40Q8BWR4 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Usp40Q8BWR4 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC26.56■■□□□ 1.84
Usp40Q8BWR4 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC26.55■■□□□ 1.84
Usp40Q8BWR4 Gm6277-202ENSMUST00000224036 2779 ntBASIC26.55■■□□□ 1.84
Usp40Q8BWR4 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Usp40Q8BWR4 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Usp40Q8BWR4 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC26.55■■□□□ 1.84
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms