Protein–RNA interactions for Protein: Q8BJ37

Tdp1, Tyrosyl-DNA phosphodiesterase 1, mousemouse

Predictions only

Length 609 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tdp1Q8BJ37 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Tdp1Q8BJ37 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Tdp1Q8BJ37 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Tdp1Q8BJ37 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Tdp1Q8BJ37 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Tdp1Q8BJ37 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Tdp1Q8BJ37 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Tdp1Q8BJ37 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Tdp1Q8BJ37 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Tdp1Q8BJ37 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Tdp1Q8BJ37 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Tdp1Q8BJ37 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Tdp1Q8BJ37 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Tdp1Q8BJ37 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Tdp1Q8BJ37 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Tdp1Q8BJ37 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Tdp1Q8BJ37 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC21.37■■□□□ 1.01
Tdp1Q8BJ37 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Tdp1Q8BJ37 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Tdp1Q8BJ37 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Tdp1Q8BJ37 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Tdp1Q8BJ37 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Tdp1Q8BJ37 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Tdp1Q8BJ37 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Tdp1Q8BJ37 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
Tdp1Q8BJ37 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC21.36■■□□□ 1.01
Tdp1Q8BJ37 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Tdp1Q8BJ37 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Tdp1Q8BJ37 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Tdp1Q8BJ37 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
Tdp1Q8BJ37 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC21.36■■□□□ 1.01
Tdp1Q8BJ37 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Tdp1Q8BJ37 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Tdp1Q8BJ37 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Tdp1Q8BJ37 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
Tdp1Q8BJ37 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Tdp1Q8BJ37 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Tdp1Q8BJ37 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC21.35■■□□□ 1.01
Tdp1Q8BJ37 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Tdp1Q8BJ37 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Tdp1Q8BJ37 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Tdp1Q8BJ37 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Tdp1Q8BJ37 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Tdp1Q8BJ37 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Tdp1Q8BJ37 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Tdp1Q8BJ37 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Tdp1Q8BJ37 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Tdp1Q8BJ37 Gm8520-201ENSMUST00000186517 868 ntBASIC21.34■■□□□ 1.01
Tdp1Q8BJ37 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC21.34■■□□□ 1.01
Tdp1Q8BJ37 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC21.34■■□□□ 1.01
Tdp1Q8BJ37 AC122769.4-201ENSMUST00000228166 901 ntBASIC21.34■■□□□ 1.01
Tdp1Q8BJ37 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Tdp1Q8BJ37 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC21.34■■□□□ 1.01
Tdp1Q8BJ37 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Tdp1Q8BJ37 AC131586.2-201ENSMUST00000228370 1512 ntBASIC21.34■■□□□ 1.01
Tdp1Q8BJ37 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.01
Tdp1Q8BJ37 Gm20100-201ENSMUST00000209418 2272 ntBASIC21.34■■□□□ 1.01
Tdp1Q8BJ37 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
Tdp1Q8BJ37 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Tdp1Q8BJ37 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Tdp1Q8BJ37 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Tdp1Q8BJ37 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Tdp1Q8BJ37 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
Tdp1Q8BJ37 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Tdp1Q8BJ37 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Tdp1Q8BJ37 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Tdp1Q8BJ37 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
Tdp1Q8BJ37 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
Tdp1Q8BJ37 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Tdp1Q8BJ37 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Tdp1Q8BJ37 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC21.32■■□□□ 1
Tdp1Q8BJ37 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC21.32■■□□□ 1
Tdp1Q8BJ37 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
Tdp1Q8BJ37 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC21.32■■□□□ 1
Tdp1Q8BJ37 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC21.32■■□□□ 1
Tdp1Q8BJ37 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Tdp1Q8BJ37 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC21.31■■□□□ 1
Tdp1Q8BJ37 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC21.31■■□□□ 1
Tdp1Q8BJ37 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC21.31■■□□□ 1
Tdp1Q8BJ37 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC21.31■■□□□ 1
Tdp1Q8BJ37 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Tdp1Q8BJ37 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Tdp1Q8BJ37 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Tdp1Q8BJ37 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC21.31■■□□□ 1
Tdp1Q8BJ37 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Tdp1Q8BJ37 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Tdp1Q8BJ37 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Tdp1Q8BJ37 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
Tdp1Q8BJ37 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Tdp1Q8BJ37 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Tdp1Q8BJ37 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Tdp1Q8BJ37 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Tdp1Q8BJ37 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC21.3■■□□□ 1
Tdp1Q8BJ37 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Tdp1Q8BJ37 Gm27032-201ENSMUST00000183124 1116 ntBASIC21.3■■□□□ 1
Tdp1Q8BJ37 AC135637.1-201ENSMUST00000227750 365 ntBASIC21.3■■□□□ 1
Tdp1Q8BJ37 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC21.3■■□□□ 1
Tdp1Q8BJ37 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Tdp1Q8BJ37 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Tdp1Q8BJ37 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms