Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rnf220Q6PDX6 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf220Q6PDX6 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf220Q6PDX6 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf220Q6PDX6 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf220Q6PDX6 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC18.2■□□□□ 0.5
Rnf220Q6PDX6 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf220Q6PDX6 Nsd1-203ENSMUST00000224156 1149 ntBASIC18.2■□□□□ 0.5
Rnf220Q6PDX6 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf220Q6PDX6 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Rnf220Q6PDX6 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf220Q6PDX6 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf220Q6PDX6 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf220Q6PDX6 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf220Q6PDX6 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf220Q6PDX6 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf220Q6PDX6 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Rnf220Q6PDX6 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf220Q6PDX6 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf220Q6PDX6 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf220Q6PDX6 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf220Q6PDX6 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf220Q6PDX6 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf220Q6PDX6 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf220Q6PDX6 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf220Q6PDX6 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf220Q6PDX6 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf220Q6PDX6 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf220Q6PDX6 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf220Q6PDX6 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf220Q6PDX6 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf220Q6PDX6 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf220Q6PDX6 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf220Q6PDX6 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf220Q6PDX6 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
Rnf220Q6PDX6 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf220Q6PDX6 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf220Q6PDX6 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf220Q6PDX6 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC18.19■□□□□ 0.5
Rnf220Q6PDX6 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Rnf220Q6PDX6 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Rnf220Q6PDX6 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rnf220Q6PDX6 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rnf220Q6PDX6 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rnf220Q6PDX6 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
Rnf220Q6PDX6 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rnf220Q6PDX6 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rnf220Q6PDX6 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rnf220Q6PDX6 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Rnf220Q6PDX6 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rnf220Q6PDX6 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC18.17■□□□□ 0.5
Rnf220Q6PDX6 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rnf220Q6PDX6 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rnf220Q6PDX6 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rnf220Q6PDX6 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rnf220Q6PDX6 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC18.16■□□□□ 0.5
Rnf220Q6PDX6 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Rnf220Q6PDX6 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Rnf220Q6PDX6 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC18.16■□□□□ 0.5
Rnf220Q6PDX6 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rnf220Q6PDX6 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Rnf220Q6PDX6 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC18.16■□□□□ 0.5
Rnf220Q6PDX6 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Rnf220Q6PDX6 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC18.16■□□□□ 0.5
Rnf220Q6PDX6 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Rnf220Q6PDX6 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rnf220Q6PDX6 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rnf220Q6PDX6 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rnf220Q6PDX6 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Rnf220Q6PDX6 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rnf220Q6PDX6 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rnf220Q6PDX6 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rnf220Q6PDX6 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rnf220Q6PDX6 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rnf220Q6PDX6 Cap2-205ENSMUST00000225824 1634 ntBASIC18.16■□□□□ 0.5
Rnf220Q6PDX6 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rnf220Q6PDX6 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rnf220Q6PDX6 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rnf220Q6PDX6 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rnf220Q6PDX6 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rnf220Q6PDX6 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rnf220Q6PDX6 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC18.15■□□□□ 0.5
Rnf220Q6PDX6 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rnf220Q6PDX6 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC18.15■□□□□ 0.5
Rnf220Q6PDX6 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC18.15■□□□□ 0.5
Rnf220Q6PDX6 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Rnf220Q6PDX6 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rnf220Q6PDX6 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rnf220Q6PDX6 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rnf220Q6PDX6 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Rnf220Q6PDX6 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Rnf220Q6PDX6 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC18.14■□□□□ 0.5
Rnf220Q6PDX6 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Rnf220Q6PDX6 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Rnf220Q6PDX6 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Rnf220Q6PDX6 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Rnf220Q6PDX6 Gm16464-201ENSMUST00000117815 1095 ntBASIC18.14■□□□□ 0.49
Rnf220Q6PDX6 Dmtn-210ENSMUST00000228824 2377 ntBASIC18.14■□□□□ 0.49
Rnf220Q6PDX6 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC18.14■□□□□ 0.49
Rnf220Q6PDX6 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC18.14■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 38 ms