Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
Hmgb4Q6P8W9 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Hmgb4Q6P8W9 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC20.17■□□□□ 0.82
Hmgb4Q6P8W9 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Hmgb4Q6P8W9 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC20.17■□□□□ 0.82
Hmgb4Q6P8W9 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Hmgb4Q6P8W9 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Hmgb4Q6P8W9 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC20.17■□□□□ 0.82
Hmgb4Q6P8W9 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Hmgb4Q6P8W9 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC20.17■□□□□ 0.82
Hmgb4Q6P8W9 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC20.17■□□□□ 0.82
Hmgb4Q6P8W9 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Hmgb4Q6P8W9 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Hmgb4Q6P8W9 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Hmgb4Q6P8W9 Gm43545-201ENSMUST00000196765 2779 ntBASIC20.16■□□□□ 0.82
Hmgb4Q6P8W9 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Hmgb4Q6P8W9 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC20.16■□□□□ 0.82
Hmgb4Q6P8W9 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC20.16■□□□□ 0.82
Hmgb4Q6P8W9 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Hmgb4Q6P8W9 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Hmgb4Q6P8W9 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Hmgb4Q6P8W9 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Hmgb4Q6P8W9 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Hmgb4Q6P8W9 Gm10571-201ENSMUST00000097869 1638 ntBASIC20.16■□□□□ 0.82
Hmgb4Q6P8W9 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Hmgb4Q6P8W9 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Hmgb4Q6P8W9 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Hmgb4Q6P8W9 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Hmgb4Q6P8W9 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Hmgb4Q6P8W9 Gm14281-201ENSMUST00000121700 1294 ntBASIC20.15■□□□□ 0.82
Hmgb4Q6P8W9 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Hmgb4Q6P8W9 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC20.15■□□□□ 0.82
Hmgb4Q6P8W9 AC112142.1-201ENSMUST00000228796 918 ntBASIC20.15■□□□□ 0.82
Hmgb4Q6P8W9 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Hmgb4Q6P8W9 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Hmgb4Q6P8W9 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Hmgb4Q6P8W9 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Hmgb4Q6P8W9 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
Hmgb4Q6P8W9 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Hmgb4Q6P8W9 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Hmgb4Q6P8W9 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Hmgb4Q6P8W9 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Hmgb4Q6P8W9 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Hmgb4Q6P8W9 Gm13234-201ENSMUST00000120010 747 ntBASIC20.14■□□□□ 0.81
Hmgb4Q6P8W9 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Hmgb4Q6P8W9 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC20.14■□□□□ 0.81
Hmgb4Q6P8W9 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
Hmgb4Q6P8W9 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Hmgb4Q6P8W9 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Hmgb4Q6P8W9 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC20.14■□□□□ 0.81
Hmgb4Q6P8W9 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Hmgb4Q6P8W9 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Hmgb4Q6P8W9 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC20.13■□□□□ 0.81
Hmgb4Q6P8W9 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Hmgb4Q6P8W9 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Hmgb4Q6P8W9 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Hmgb4Q6P8W9 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Hmgb4Q6P8W9 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Hmgb4Q6P8W9 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC20.13■□□□□ 0.81
Hmgb4Q6P8W9 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Hmgb4Q6P8W9 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
Hmgb4Q6P8W9 Gm27801-201ENSMUST00000184174 223 ntBASIC20.13■□□□□ 0.81
Hmgb4Q6P8W9 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC20.13■□□□□ 0.81
Hmgb4Q6P8W9 CT025689.6-201ENSMUST00000224991 1104 ntBASIC20.13■□□□□ 0.81
Hmgb4Q6P8W9 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Hmgb4Q6P8W9 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC20.13■□□□□ 0.81
Hmgb4Q6P8W9 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Hmgb4Q6P8W9 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Hmgb4Q6P8W9 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC20.13■□□□□ 0.81
Hmgb4Q6P8W9 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Hmgb4Q6P8W9 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Hmgb4Q6P8W9 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Hmgb4Q6P8W9 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Hmgb4Q6P8W9 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Hmgb4Q6P8W9 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
Hmgb4Q6P8W9 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC20.12■□□□□ 0.81
Hmgb4Q6P8W9 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC20.12■□□□□ 0.81
Hmgb4Q6P8W9 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC20.12■□□□□ 0.81
Hmgb4Q6P8W9 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Hmgb4Q6P8W9 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Hmgb4Q6P8W9 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Hmgb4Q6P8W9 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Hmgb4Q6P8W9 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Hmgb4Q6P8W9 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Hmgb4Q6P8W9 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC20.11■□□□□ 0.81
Hmgb4Q6P8W9 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Hmgb4Q6P8W9 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Hmgb4Q6P8W9 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Hmgb4Q6P8W9 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC20.11■□□□□ 0.81
Hmgb4Q6P8W9 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Hmgb4Q6P8W9 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Hmgb4Q6P8W9 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Hmgb4Q6P8W9 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Hmgb4Q6P8W9 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC20.1■□□□□ 0.81
Hmgb4Q6P8W9 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Hmgb4Q6P8W9 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Hmgb4Q6P8W9 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Hmgb4Q6P8W9 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC20.1■□□□□ 0.81
Hmgb4Q6P8W9 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Hmgb4Q6P8W9 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 16.3 ms