Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col7a1Q63870 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col7a1Q63870 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Col7a1Q63870 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col7a1Q63870 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col7a1Q63870 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col7a1Q63870 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Col7a1Q63870 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col7a1Q63870 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Col7a1Q63870 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col7a1Q63870 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col7a1Q63870 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC16.36■□□□□ 0.21
Col7a1Q63870 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Col7a1Q63870 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Col7a1Q63870 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col7a1Q63870 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
Col7a1Q63870 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col7a1Q63870 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col7a1Q63870 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC16.35■□□□□ 0.21
Col7a1Q63870 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col7a1Q63870 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Col7a1Q63870 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col7a1Q63870 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col7a1Q63870 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col7a1Q63870 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
Col7a1Q63870 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col7a1Q63870 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col7a1Q63870 Gm9103-201ENSMUST00000119371 405 ntBASIC16.35■□□□□ 0.21
Col7a1Q63870 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Col7a1Q63870 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col7a1Q63870 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Col7a1Q63870 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC16.34■□□□□ 0.21
Col7a1Q63870 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Col7a1Q63870 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col7a1Q63870 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Col7a1Q63870 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col7a1Q63870 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Col7a1Q63870 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
Col7a1Q63870 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col7a1Q63870 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col7a1Q63870 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Col7a1Q63870 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Col7a1Q63870 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Col7a1Q63870 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Col7a1Q63870 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Col7a1Q63870 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col7a1Q63870 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Col7a1Q63870 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Col7a1Q63870 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC16.32■□□□□ 0.2
Col7a1Q63870 Gm5867-201ENSMUST00000063197 592 ntBASIC16.32■□□□□ 0.2
Col7a1Q63870 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Col7a1Q63870 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col7a1Q63870 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Col7a1Q63870 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col7a1Q63870 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col7a1Q63870 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Col7a1Q63870 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
Col7a1Q63870 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Col7a1Q63870 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
Col7a1Q63870 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
Col7a1Q63870 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Col7a1Q63870 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC16.32■□□□□ 0.2
Col7a1Q63870 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC16.32■□□□□ 0.2
Col7a1Q63870 Gm23634-201ENSMUST00000175071 91 ntBASIC16.32■□□□□ 0.2
Col7a1Q63870 Gm6345-202ENSMUST00000180900 204 ntBASIC16.32■□□□□ 0.2
Col7a1Q63870 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC16.32■□□□□ 0.2
Col7a1Q63870 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col7a1Q63870 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col7a1Q63870 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC16.31■□□□□ 0.2
Col7a1Q63870 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC16.31■□□□□ 0.2
Col7a1Q63870 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col7a1Q63870 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC16.3■□□□□ 0.2
Col7a1Q63870 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col7a1Q63870 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Col7a1Q63870 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col7a1Q63870 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col7a1Q63870 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col7a1Q63870 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC16.3■□□□□ 0.2
Col7a1Q63870 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC16.3■□□□□ 0.2
Col7a1Q63870 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Col7a1Q63870 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col7a1Q63870 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col7a1Q63870 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col7a1Q63870 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col7a1Q63870 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
Col7a1Q63870 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col7a1Q63870 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC16.29■□□□□ 0.2
Col7a1Q63870 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col7a1Q63870 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col7a1Q63870 Gm42911-201ENSMUST00000199360 1630 ntBASIC16.29■□□□□ 0.2
Col7a1Q63870 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col7a1Q63870 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col7a1Q63870 AC159205.3-201ENSMUST00000224614 874 ntBASIC16.29■□□□□ 0.2
Col7a1Q63870 Gm7461-201ENSMUST00000058918 827 ntBASIC16.29■□□□□ 0.2
Col7a1Q63870 Gm10013-201ENSMUST00000106074 672 ntBASIC16.29■□□□□ 0.2
Col7a1Q63870 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col7a1Q63870 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Col7a1Q63870 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col7a1Q63870 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col7a1Q63870 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms