Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
Trim27Q62158 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Trim27Q62158 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC23.78■■□□□ 1.4
Trim27Q62158 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Trim27Q62158 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Trim27Q62158 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
Trim27Q62158 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
Trim27Q62158 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
Trim27Q62158 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
Trim27Q62158 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Trim27Q62158 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
Trim27Q62158 CT030146.1-201ENSMUST00000220919 217 ntBASIC23.77■■□□□ 1.4
Trim27Q62158 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
Trim27Q62158 AC124603.1-201ENSMUST00000223843 308 ntBASIC23.77■■□□□ 1.4
Trim27Q62158 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Trim27Q62158 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Trim27Q62158 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Trim27Q62158 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Trim27Q62158 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Trim27Q62158 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Trim27Q62158 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
Trim27Q62158 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Trim27Q62158 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Trim27Q62158 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC23.76■■□□□ 1.39
Trim27Q62158 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC23.76■■□□□ 1.39
Trim27Q62158 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Trim27Q62158 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
Trim27Q62158 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Trim27Q62158 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
Trim27Q62158 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Trim27Q62158 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
Trim27Q62158 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
Trim27Q62158 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC23.75■■□□□ 1.39
Trim27Q62158 Gm2011-201ENSMUST00000203124 1263 ntBASIC23.75■■□□□ 1.39
Trim27Q62158 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC23.75■■□□□ 1.39
Trim27Q62158 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
Trim27Q62158 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
Trim27Q62158 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Trim27Q62158 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC23.75■■□□□ 1.39
Trim27Q62158 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Trim27Q62158 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Trim27Q62158 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC23.75■■□□□ 1.39
Trim27Q62158 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
Trim27Q62158 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Trim27Q62158 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
Trim27Q62158 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Trim27Q62158 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
Trim27Q62158 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC23.74■■□□□ 1.39
Trim27Q62158 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
Trim27Q62158 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC23.74■■□□□ 1.39
Trim27Q62158 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Trim27Q62158 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
Trim27Q62158 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Trim27Q62158 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Trim27Q62158 Gm18688-201ENSMUST00000204695 1859 ntBASIC23.73■■□□□ 1.39
Trim27Q62158 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
Trim27Q62158 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC23.73■■□□□ 1.39
Trim27Q62158 Cdc34b-202ENSMUST00000188741 1252 ntBASIC23.73■■□□□ 1.39
Trim27Q62158 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Trim27Q62158 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
Trim27Q62158 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Trim27Q62158 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Trim27Q62158 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
Trim27Q62158 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC23.72■■□□□ 1.39
Trim27Q62158 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Trim27Q62158 Gm27801-201ENSMUST00000184174 223 ntBASIC23.72■■□□□ 1.39
Trim27Q62158 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
Trim27Q62158 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
Trim27Q62158 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Trim27Q62158 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Trim27Q62158 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
Trim27Q62158 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
Trim27Q62158 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Trim27Q62158 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Trim27Q62158 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC23.71■■□□□ 1.39
Trim27Q62158 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC23.71■■□□□ 1.39
Trim27Q62158 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC23.71■■□□□ 1.39
Trim27Q62158 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC23.71■■□□□ 1.39
Trim27Q62158 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Trim27Q62158 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC23.71■■□□□ 1.39
Trim27Q62158 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
Trim27Q62158 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Trim27Q62158 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Trim27Q62158 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC23.7■■□□□ 1.39
Trim27Q62158 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
Trim27Q62158 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.38
Trim27Q62158 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Trim27Q62158 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
Trim27Q62158 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Trim27Q62158 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Trim27Q62158 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC23.69■■□□□ 1.38
Trim27Q62158 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC23.69■■□□□ 1.38
Trim27Q62158 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Trim27Q62158 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
Trim27Q62158 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
Trim27Q62158 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
Trim27Q62158 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Trim27Q62158 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Trim27Q62158 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Trim27Q62158 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms