Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usf1Q61069 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usf1Q61069 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
Usf1Q61069 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usf1Q61069 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Usf1Q61069 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usf1Q61069 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Usf1Q61069 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Usf1Q61069 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usf1Q61069 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Usf1Q61069 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Usf1Q61069 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usf1Q61069 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usf1Q61069 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
Usf1Q61069 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC17.61■□□□□ 0.41
Usf1Q61069 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usf1Q61069 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC17.61■□□□□ 0.41
Usf1Q61069 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC17.61■□□□□ 0.41
Usf1Q61069 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usf1Q61069 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Usf1Q61069 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Usf1Q61069 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usf1Q61069 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Usf1Q61069 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Usf1Q61069 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usf1Q61069 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usf1Q61069 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usf1Q61069 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Usf1Q61069 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Usf1Q61069 AA386476-201ENSMUST00000098781 1665 ntBASIC17.61■□□□□ 0.41
Usf1Q61069 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
Usf1Q61069 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usf1Q61069 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usf1Q61069 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usf1Q61069 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usf1Q61069 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usf1Q61069 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usf1Q61069 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Usf1Q61069 Gm37563-201ENSMUST00000192580 1513 ntBASIC17.59■□□□□ 0.41
Usf1Q61069 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usf1Q61069 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Usf1Q61069 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Usf1Q61069 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC17.59■□□□□ 0.41
Usf1Q61069 Gm27275-201ENSMUST00000184318 272 ntBASIC17.59■□□□□ 0.41
Usf1Q61069 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Usf1Q61069 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usf1Q61069 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usf1Q61069 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Usf1Q61069 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usf1Q61069 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Usf1Q61069 Gm13836-201ENSMUST00000121159 501 ntBASIC17.58■□□□□ 0.4
Usf1Q61069 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC17.58■□□□□ 0.4
Usf1Q61069 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Usf1Q61069 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
Usf1Q61069 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Usf1Q61069 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usf1Q61069 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
Usf1Q61069 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Usf1Q61069 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
Usf1Q61069 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usf1Q61069 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usf1Q61069 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC17.58■□□□□ 0.4
Usf1Q61069 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Usf1Q61069 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usf1Q61069 AC131586.2-201ENSMUST00000228370 1512 ntBASIC17.57■□□□□ 0.4
Usf1Q61069 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Usf1Q61069 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Usf1Q61069 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usf1Q61069 Gm12896-201ENSMUST00000118430 226 ntBASIC17.57■□□□□ 0.4
Usf1Q61069 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC17.57■□□□□ 0.4
Usf1Q61069 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usf1Q61069 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Usf1Q61069 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usf1Q61069 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usf1Q61069 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usf1Q61069 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usf1Q61069 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usf1Q61069 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC17.56■□□□□ 0.4
Usf1Q61069 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Usf1Q61069 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usf1Q61069 Gm6576-201ENSMUST00000169678 883 ntBASIC17.56■□□□□ 0.4
Usf1Q61069 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC17.56■□□□□ 0.4
Usf1Q61069 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Usf1Q61069 Arhgef33-211ENSMUST00000225658 473 ntBASIC17.56■□□□□ 0.4
Usf1Q61069 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usf1Q61069 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Usf1Q61069 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usf1Q61069 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usf1Q61069 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usf1Q61069 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usf1Q61069 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usf1Q61069 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usf1Q61069 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usf1Q61069 Gm7860-201ENSMUST00000121190 879 ntBASIC17.55■□□□□ 0.4
Usf1Q61069 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
Usf1Q61069 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC17.55■□□□□ 0.4
Usf1Q61069 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Usf1Q61069 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Usf1Q61069 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usf1Q61069 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms