Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC18.34■□□□□ 0.53
Nr1h4Q60641 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nr1h4Q60641 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nr1h4Q60641 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nr1h4Q60641 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Nr1h4Q60641 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Nr1h4Q60641 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Nr1h4Q60641 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC18.33■□□□□ 0.53
Nr1h4Q60641 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Nr1h4Q60641 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Nr1h4Q60641 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Nr1h4Q60641 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Nr1h4Q60641 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Nr1h4Q60641 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Nr1h4Q60641 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC18.32■□□□□ 0.52
Nr1h4Q60641 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Nr1h4Q60641 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Nr1h4Q60641 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Nr1h4Q60641 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Nr1h4Q60641 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Nr1h4Q60641 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Nr1h4Q60641 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Nr1h4Q60641 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Nr1h4Q60641 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
Nr1h4Q60641 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Nr1h4Q60641 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Nr1h4Q60641 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
Nr1h4Q60641 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Nr1h4Q60641 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Nr1h4Q60641 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Nr1h4Q60641 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Nr1h4Q60641 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Nr1h4Q60641 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Nr1h4Q60641 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Nr1h4Q60641 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Nr1h4Q60641 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Nr1h4Q60641 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Nr1h4Q60641 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Nr1h4Q60641 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Nr1h4Q60641 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Nr1h4Q60641 Gm27045-201ENSMUST00000182145 1402 ntBASIC18.31■□□□□ 0.52
Nr1h4Q60641 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Nr1h4Q60641 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Nr1h4Q60641 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Nr1h4Q60641 AC126028.2-201ENSMUST00000228100 1833 ntBASIC18.3■□□□□ 0.52
Nr1h4Q60641 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Nr1h4Q60641 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Nr1h4Q60641 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Nr1h4Q60641 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC18.3■□□□□ 0.52
Nr1h4Q60641 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Nr1h4Q60641 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Nr1h4Q60641 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Nr1h4Q60641 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Nr1h4Q60641 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Nr1h4Q60641 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Nr1h4Q60641 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Nr1h4Q60641 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Nr1h4Q60641 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Nr1h4Q60641 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Nr1h4Q60641 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Nr1h4Q60641 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Nr1h4Q60641 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Nr1h4Q60641 Gm20100-201ENSMUST00000209418 2272 ntBASIC18.29■□□□□ 0.52
Nr1h4Q60641 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
Nr1h4Q60641 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Nr1h4Q60641 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Nr1h4Q60641 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Nr1h4Q60641 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC18.29■□□□□ 0.52
Nr1h4Q60641 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
Nr1h4Q60641 Krt8-ps-201ENSMUST00000208495 945 ntBASIC18.29■□□□□ 0.52
Nr1h4Q60641 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Nr1h4Q60641 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Nr1h4Q60641 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Nr1h4Q60641 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Nr1h4Q60641 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Nr1h4Q60641 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Nr1h4Q60641 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Nr1h4Q60641 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Nr1h4Q60641 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Nr1h4Q60641 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Nr1h4Q60641 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Nr1h4Q60641 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Nr1h4Q60641 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Nr1h4Q60641 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Nr1h4Q60641 Gm15820-201ENSMUST00000201566 728 ntBASIC18.28■□□□□ 0.52
Nr1h4Q60641 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC18.28■□□□□ 0.52
Nr1h4Q60641 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Nr1h4Q60641 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Nr1h4Q60641 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Nr1h4Q60641 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Nr1h4Q60641 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Nr1h4Q60641 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Nr1h4Q60641 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Nr1h4Q60641 Gm6085-201ENSMUST00000182774 1470 ntBASIC18.27■□□□□ 0.52
Nr1h4Q60641 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC18.27■□□□□ 0.52
Nr1h4Q60641 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Nr1h4Q60641 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Nr1h4Q60641 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Nr1h4Q60641 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Nr1h4Q60641 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms