Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Gm6365-201ENSMUST00000054711 744 ntBASIC31.84■■■□□ 2.69
Ccdc88bQ4QRL3 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC31.84■■■□□ 2.69
Ccdc88bQ4QRL3 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC31.84■■■□□ 2.69
Ccdc88bQ4QRL3 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC31.84■■■□□ 2.69
Ccdc88bQ4QRL3 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC31.84■■■□□ 2.69
Ccdc88bQ4QRL3 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC31.84■■■□□ 2.69
Ccdc88bQ4QRL3 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
Ccdc88bQ4QRL3 Gm7290-201ENSMUST00000104990 617 ntBASIC31.84■■■□□ 2.69
Ccdc88bQ4QRL3 Gm12918-201ENSMUST00000120234 636 ntBASIC31.84■■■□□ 2.69
Ccdc88bQ4QRL3 Gm15710-201ENSMUST00000121821 636 ntBASIC31.84■■■□□ 2.69
Ccdc88bQ4QRL3 Gm5075-201ENSMUST00000196916 622 ntBASIC31.84■■■□□ 2.69
Ccdc88bQ4QRL3 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC31.84■■■□□ 2.69
Ccdc88bQ4QRL3 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC31.84■■■□□ 2.69
Ccdc88bQ4QRL3 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
Ccdc88bQ4QRL3 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
Ccdc88bQ4QRL3 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
Ccdc88bQ4QRL3 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC31.83■■■□□ 2.69
Ccdc88bQ4QRL3 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC31.83■■■□□ 2.69
Ccdc88bQ4QRL3 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC31.83■■■□□ 2.69
Ccdc88bQ4QRL3 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
Ccdc88bQ4QRL3 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
Ccdc88bQ4QRL3 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
Ccdc88bQ4QRL3 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
Ccdc88bQ4QRL3 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Ccdc88bQ4QRL3 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
Ccdc88bQ4QRL3 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Ccdc88bQ4QRL3 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Ccdc88bQ4QRL3 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC31.82■■■□□ 2.68
Ccdc88bQ4QRL3 Gm27032-201ENSMUST00000183124 1116 ntBASIC31.82■■■□□ 2.68
Ccdc88bQ4QRL3 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC31.82■■■□□ 2.68
Ccdc88bQ4QRL3 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Ccdc88bQ4QRL3 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Ccdc88bQ4QRL3 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC31.81■■■□□ 2.68
Ccdc88bQ4QRL3 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC31.81■■■□□ 2.68
Ccdc88bQ4QRL3 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC31.81■■■□□ 2.68
Ccdc88bQ4QRL3 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Ccdc88bQ4QRL3 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC31.8■■■□□ 2.68
Ccdc88bQ4QRL3 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Ccdc88bQ4QRL3 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC31.8■■■□□ 2.68
Ccdc88bQ4QRL3 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Ccdc88bQ4QRL3 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Ccdc88bQ4QRL3 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Ccdc88bQ4QRL3 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC31.79■■■□□ 2.68
Ccdc88bQ4QRL3 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Ccdc88bQ4QRL3 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC31.79■■■□□ 2.68
Ccdc88bQ4QRL3 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Ccdc88bQ4QRL3 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
Ccdc88bQ4QRL3 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC31.78■■■□□ 2.68
Ccdc88bQ4QRL3 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC31.78■■■□□ 2.68
Ccdc88bQ4QRL3 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
Ccdc88bQ4QRL3 Gm10252-201ENSMUST00000209541 832 ntBASIC31.78■■■□□ 2.68
Ccdc88bQ4QRL3 AC122769.4-201ENSMUST00000228166 901 ntBASIC31.78■■■□□ 2.68
Ccdc88bQ4QRL3 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
Ccdc88bQ4QRL3 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
Ccdc88bQ4QRL3 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
Ccdc88bQ4QRL3 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
Ccdc88bQ4QRL3 AC131586.2-201ENSMUST00000228370 1512 ntBASIC31.77■■■□□ 2.68
Ccdc88bQ4QRL3 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
Ccdc88bQ4QRL3 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
Ccdc88bQ4QRL3 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC31.77■■■□□ 2.68
Ccdc88bQ4QRL3 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
Ccdc88bQ4QRL3 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC31.77■■■□□ 2.68
Ccdc88bQ4QRL3 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC31.76■■■□□ 2.67
Ccdc88bQ4QRL3 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
Ccdc88bQ4QRL3 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC31.76■■■□□ 2.67
Ccdc88bQ4QRL3 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC31.75■■■□□ 2.67
Ccdc88bQ4QRL3 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC31.75■■■□□ 2.67
Ccdc88bQ4QRL3 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
Ccdc88bQ4QRL3 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC31.75■■■□□ 2.67
Ccdc88bQ4QRL3 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC31.75■■■□□ 2.67
Ccdc88bQ4QRL3 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC31.75■■■□□ 2.67
Ccdc88bQ4QRL3 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
Ccdc88bQ4QRL3 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC31.75■■■□□ 2.67
Ccdc88bQ4QRL3 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC31.75■■■□□ 2.67
Ccdc88bQ4QRL3 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC31.75■■■□□ 2.67
Ccdc88bQ4QRL3 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
Ccdc88bQ4QRL3 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
Ccdc88bQ4QRL3 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
Ccdc88bQ4QRL3 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC31.74■■■□□ 2.67
Ccdc88bQ4QRL3 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
Ccdc88bQ4QRL3 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC31.73■■■□□ 2.67
Ccdc88bQ4QRL3 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC31.72■■■□□ 2.67
Ccdc88bQ4QRL3 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC31.72■■■□□ 2.67
Ccdc88bQ4QRL3 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
Ccdc88bQ4QRL3 Gm38160-201ENSMUST00000193090 2499 ntBASIC31.72■■■□□ 2.67
Ccdc88bQ4QRL3 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC31.72■■■□□ 2.67
Ccdc88bQ4QRL3 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC31.72■■■□□ 2.67
Ccdc88bQ4QRL3 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
Ccdc88bQ4QRL3 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC31.72■■■□□ 2.67
Ccdc88bQ4QRL3 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
Ccdc88bQ4QRL3 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
Ccdc88bQ4QRL3 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
Ccdc88bQ4QRL3 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC31.71■■■□□ 2.67
Ccdc88bQ4QRL3 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC31.71■■■□□ 2.67
Ccdc88bQ4QRL3 Gm5408-201ENSMUST00000197998 747 ntBASIC31.71■■■□□ 2.67
Ccdc88bQ4QRL3 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC31.71■■■□□ 2.67
Ccdc88bQ4QRL3 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
Ccdc88bQ4QRL3 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC31.7■■■□□ 2.67
Ccdc88bQ4QRL3 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC31.7■■■□□ 2.67
Ccdc88bQ4QRL3 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
Retrieved 100 of 76,532 protein–RNA pairs in 13.9 ms