Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Cux1P53564 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
Cux1P53564 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
Cux1P53564 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
Cux1P53564 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
Cux1P53564 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
Cux1P53564 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC30.15■■■□□ 2.42
Cux1P53564 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC30.15■■■□□ 2.42
Cux1P53564 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
Cux1P53564 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Cux1P53564 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Cux1P53564 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC30.14■■■□□ 2.42
Cux1P53564 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
Cux1P53564 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC30.14■■■□□ 2.42
Cux1P53564 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC30.14■■■□□ 2.42
Cux1P53564 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC30.14■■■□□ 2.42
Cux1P53564 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
Cux1P53564 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
Cux1P53564 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
Cux1P53564 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC30.14■■■□□ 2.41
Cux1P53564 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC30.13■■■□□ 2.41
Cux1P53564 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
Cux1P53564 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
Cux1P53564 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
Cux1P53564 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC30.13■■■□□ 2.41
Cux1P53564 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
Cux1P53564 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
Cux1P53564 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
Cux1P53564 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
Cux1P53564 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC30.12■■■□□ 2.41
Cux1P53564 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC30.12■■■□□ 2.41
Cux1P53564 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
Cux1P53564 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Cux1P53564 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Cux1P53564 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
Cux1P53564 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC30.1■■■□□ 2.41
Cux1P53564 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
Cux1P53564 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC30.1■■■□□ 2.41
Cux1P53564 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Cux1P53564 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC30.09■■■□□ 2.41
Cux1P53564 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
Cux1P53564 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
Cux1P53564 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC30.08■■■□□ 2.41
Cux1P53564 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC30.08■■■□□ 2.41
Cux1P53564 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
Cux1P53564 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
Cux1P53564 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC30.07■■■□□ 2.4
Cux1P53564 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC30.07■■■□□ 2.4
Cux1P53564 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
Cux1P53564 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Cux1P53564 Gm10812-201ENSMUST00000099864 546 ntBASIC30.06■■■□□ 2.4
Cux1P53564 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Cux1P53564 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
Cux1P53564 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
Cux1P53564 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Cux1P53564 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Cux1P53564 Gm13181-201ENSMUST00000120117 1069 ntBASIC30.06■■■□□ 2.4
Cux1P53564 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
Cux1P53564 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC30.05■■■□□ 2.4
Cux1P53564 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC30.05■■■□□ 2.4
Cux1P53564 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC30.05■■■□□ 2.4
Cux1P53564 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
Cux1P53564 Gm13509-201ENSMUST00000119733 1308 ntBASIC30.05■■■□□ 2.4
Cux1P53564 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
Cux1P53564 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
Cux1P53564 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC30.05■■■□□ 2.4
Cux1P53564 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC30.05■■■□□ 2.4
Cux1P53564 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC30.05■■■□□ 2.4
Cux1P53564 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC30.03■■■□□ 2.4
Cux1P53564 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
Cux1P53564 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC30.03■■■□□ 2.4
Cux1P53564 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
Cux1P53564 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC30.03■■■□□ 2.4
Cux1P53564 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
Cux1P53564 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC30.02■■■□□ 2.4
Cux1P53564 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
Cux1P53564 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
Cux1P53564 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC30.02■■■□□ 2.4
Cux1P53564 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
Cux1P53564 Gm20100-201ENSMUST00000209418 2272 ntBASIC30.02■■■□□ 2.4
Cux1P53564 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
Cux1P53564 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC30.02■■■□□ 2.4
Cux1P53564 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC30.01■■■□□ 2.4
Cux1P53564 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC30.01■■■□□ 2.4
Cux1P53564 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.4
Cux1P53564 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC30.01■■■□□ 2.39
Cux1P53564 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC30.01■■■□□ 2.39
Cux1P53564 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
Cux1P53564 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC30.01■■■□□ 2.39
Cux1P53564 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
Cux1P53564 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC30■■■□□ 2.39
Cux1P53564 Gm32699-201ENSMUST00000221728 1988 ntBASIC30■■■□□ 2.39
Cux1P53564 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
Cux1P53564 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC30■■■□□ 2.39
Cux1P53564 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC30■■■□□ 2.39
Cux1P53564 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC30■■■□□ 2.39
Cux1P53564 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC29.99■■■□□ 2.39
Cux1P53564 Mir7071-201ENSMUST00000184847 69 ntBASIC29.99■■■□□ 2.39
Cux1P53564 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC29.99■■■□□ 2.39
Cux1P53564 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms