Protein–RNA interactions for Protein: P28660

Nckap1, Nck-associated protein 1, mousemouse

Known RBP Predictions only

Length 1,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nckap1P28660 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nckap1P28660 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nckap1P28660 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nckap1P28660 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Nckap1P28660 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nckap1P28660 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nckap1P28660 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nckap1P28660 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Nckap1P28660 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Nckap1P28660 Mir5133-201ENSMUST00000174955 77 ntBASIC19.17■□□□□ 0.66
Nckap1P28660 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nckap1P28660 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nckap1P28660 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nckap1P28660 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
Nckap1P28660 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC19.17■□□□□ 0.66
Nckap1P28660 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nckap1P28660 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nckap1P28660 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nckap1P28660 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nckap1P28660 Gm38205-201ENSMUST00000192243 258 ntBASIC19.16■□□□□ 0.66
Nckap1P28660 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nckap1P28660 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nckap1P28660 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nckap1P28660 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Nckap1P28660 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Nckap1P28660 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Nckap1P28660 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Nckap1P28660 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Nckap1P28660 Gm13146-201ENSMUST00000118508 780 ntBASIC19.15■□□□□ 0.66
Nckap1P28660 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC19.15■□□□□ 0.66
Nckap1P28660 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
Nckap1P28660 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Nckap1P28660 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Nckap1P28660 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC19.15■□□□□ 0.66
Nckap1P28660 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Nckap1P28660 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Nckap1P28660 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Nckap1P28660 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Nckap1P28660 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Nckap1P28660 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Nckap1P28660 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Nckap1P28660 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nckap1P28660 Gm43909-201ENSMUST00000203443 1876 ntBASIC19.14■□□□□ 0.65
Nckap1P28660 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nckap1P28660 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Nckap1P28660 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nckap1P28660 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nckap1P28660 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Nckap1P28660 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Nckap1P28660 AC152827.1-201ENSMUST00000221143 2189 ntBASIC19.13■□□□□ 0.65
Nckap1P28660 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Nckap1P28660 Gm42555-201ENSMUST00000199304 1039 ntBASIC19.13■□□□□ 0.65
Nckap1P28660 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC19.13■□□□□ 0.65
Nckap1P28660 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Nckap1P28660 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Nckap1P28660 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Nckap1P28660 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Nckap1P28660 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Nckap1P28660 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Nckap1P28660 Snhg20-203ENSMUST00000182811 2153 ntBASIC19.13■□□□□ 0.65
Nckap1P28660 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC19.13■□□□□ 0.65
Nckap1P28660 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Nckap1P28660 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
Nckap1P28660 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Nckap1P28660 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC19.12■□□□□ 0.65
Nckap1P28660 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC19.12■□□□□ 0.65
Nckap1P28660 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC19.12■□□□□ 0.65
Nckap1P28660 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Nckap1P28660 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Nckap1P28660 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Nckap1P28660 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC19.12■□□□□ 0.65
Nckap1P28660 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nckap1P28660 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nckap1P28660 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Nckap1P28660 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nckap1P28660 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nckap1P28660 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nckap1P28660 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
Nckap1P28660 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC19.11■□□□□ 0.65
Nckap1P28660 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Nckap1P28660 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nckap1P28660 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nckap1P28660 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nckap1P28660 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nckap1P28660 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC19.1■□□□□ 0.65
Nckap1P28660 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nckap1P28660 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nckap1P28660 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nckap1P28660 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nckap1P28660 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nckap1P28660 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Nckap1P28660 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC19.1■□□□□ 0.65
Nckap1P28660 CT010467.1-202ENSMUST00000205406 714 ntBASIC19.1■□□□□ 0.65
Nckap1P28660 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nckap1P28660 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nckap1P28660 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
Nckap1P28660 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nckap1P28660 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC19.1■□□□□ 0.65
Nckap1P28660 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Nckap1P28660 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC19.1■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms