Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Cd40lgP27548 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Cd40lgP27548 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Cd40lgP27548 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Cd40lgP27548 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC17.7■□□□□ 0.42
Cd40lgP27548 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Cd40lgP27548 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Cd40lgP27548 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Cd40lgP27548 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Cd40lgP27548 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Cd40lgP27548 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Cd40lgP27548 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Cd40lgP27548 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Cd40lgP27548 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Cd40lgP27548 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cd40lgP27548 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cd40lgP27548 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cd40lgP27548 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC17.69■□□□□ 0.42
Cd40lgP27548 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cd40lgP27548 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cd40lgP27548 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC17.69■□□□□ 0.42
Cd40lgP27548 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cd40lgP27548 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Cd40lgP27548 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
Cd40lgP27548 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Cd40lgP27548 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Cd40lgP27548 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Cd40lgP27548 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cd40lgP27548 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cd40lgP27548 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cd40lgP27548 Gm34220-201ENSMUST00000223001 2709 ntBASIC17.68■□□□□ 0.42
Cd40lgP27548 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cd40lgP27548 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Cd40lgP27548 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC17.68■□□□□ 0.42
Cd40lgP27548 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cd40lgP27548 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cd40lgP27548 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cd40lgP27548 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Cd40lgP27548 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cd40lgP27548 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cd40lgP27548 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cd40lgP27548 Gm11421-201ENSMUST00000122124 294 ntBASIC17.67■□□□□ 0.42
Cd40lgP27548 Cdc34b-202ENSMUST00000188741 1252 ntBASIC17.67■□□□□ 0.42
Cd40lgP27548 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cd40lgP27548 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Cd40lgP27548 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cd40lgP27548 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Cd40lgP27548 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC17.67■□□□□ 0.42
Cd40lgP27548 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cd40lgP27548 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cd40lgP27548 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cd40lgP27548 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cd40lgP27548 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cd40lgP27548 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC17.66■□□□□ 0.42
Cd40lgP27548 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Cd40lgP27548 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Cd40lgP27548 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cd40lgP27548 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC17.66■□□□□ 0.42
Cd40lgP27548 Smad6-203ENSMUST00000179458 273 ntBASIC17.66■□□□□ 0.42
Cd40lgP27548 Gm43060-201ENSMUST00000200621 289 ntBASIC17.66■□□□□ 0.42
Cd40lgP27548 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC17.66■□□□□ 0.42
Cd40lgP27548 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cd40lgP27548 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Cd40lgP27548 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Cd40lgP27548 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cd40lgP27548 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cd40lgP27548 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC17.66■□□□□ 0.42
Cd40lgP27548 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Cd40lgP27548 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Cd40lgP27548 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
Cd40lgP27548 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC17.66■□□□□ 0.42
Cd40lgP27548 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cd40lgP27548 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Cd40lgP27548 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cd40lgP27548 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cd40lgP27548 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cd40lgP27548 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
Cd40lgP27548 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cd40lgP27548 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cd40lgP27548 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cd40lgP27548 Gm2011-201ENSMUST00000203124 1263 ntBASIC17.65■□□□□ 0.42
Cd40lgP27548 AC137127.1-201ENSMUST00000213466 1078 ntBASIC17.65■□□□□ 0.42
Cd40lgP27548 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cd40lgP27548 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Cd40lgP27548 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Cd40lgP27548 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Cd40lgP27548 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cd40lgP27548 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Cd40lgP27548 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
Cd40lgP27548 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.42
Cd40lgP27548 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Cd40lgP27548 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
Cd40lgP27548 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC17.64■□□□□ 0.42
Cd40lgP27548 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cd40lgP27548 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cd40lgP27548 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cd40lgP27548 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cd40lgP27548 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
Cd40lgP27548 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Cd40lgP27548 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms