Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
Cdx1P18111 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Cdx1P18111 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Cdx1P18111 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC15.46■□□□□ 0.07
Cdx1P18111 Gm10399-202ENSMUST00000202768 748 ntBASIC15.46■□□□□ 0.07
Cdx1P18111 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
Cdx1P18111 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Cdx1P18111 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Cdx1P18111 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Cdx1P18111 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Cdx1P18111 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Cdx1P18111 Gm43034-201ENSMUST00000198678 1364 ntBASIC15.46■□□□□ 0.07
Cdx1P18111 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC15.46■□□□□ 0.06
Cdx1P18111 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Cdx1P18111 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Cdx1P18111 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Cdx1P18111 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
Cdx1P18111 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Cdx1P18111 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Cdx1P18111 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Cdx1P18111 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC15.45■□□□□ 0.06
Cdx1P18111 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC15.45■□□□□ 0.06
Cdx1P18111 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Cdx1P18111 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Cdx1P18111 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC15.45■□□□□ 0.06
Cdx1P18111 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
Cdx1P18111 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Cdx1P18111 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Cdx1P18111 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Cdx1P18111 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Cdx1P18111 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
Cdx1P18111 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Cdx1P18111 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Cdx1P18111 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Cdx1P18111 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Cdx1P18111 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Cdx1P18111 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Cdx1P18111 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Cdx1P18111 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC15.44■□□□□ 0.06
Cdx1P18111 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Cdx1P18111 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Cdx1P18111 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC15.44■□□□□ 0.06
Cdx1P18111 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC15.44■□□□□ 0.06
Cdx1P18111 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
Cdx1P18111 Nsd1-206ENSMUST00000224918 1001 ntBASIC15.44■□□□□ 0.06
Cdx1P18111 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Cdx1P18111 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Cdx1P18111 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Cdx1P18111 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Cdx1P18111 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC15.44■□□□□ 0.06
Cdx1P18111 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Cdx1P18111 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Cdx1P18111 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Cdx1P18111 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Cdx1P18111 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Cdx1P18111 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
Cdx1P18111 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Cdx1P18111 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Cdx1P18111 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Cdx1P18111 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC15.43■□□□□ 0.06
Cdx1P18111 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Cdx1P18111 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC15.43■□□□□ 0.06
Cdx1P18111 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Cdx1P18111 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Cdx1P18111 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Cdx1P18111 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Cdx1P18111 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Cdx1P18111 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Cdx1P18111 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Cdx1P18111 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC15.43■□□□□ 0.06
Cdx1P18111 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Cdx1P18111 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Cdx1P18111 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Cdx1P18111 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Cdx1P18111 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Cdx1P18111 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC15.42■□□□□ 0.06
Cdx1P18111 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Cdx1P18111 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Cdx1P18111 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Cdx1P18111 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC15.42■□□□□ 0.06
Cdx1P18111 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Cdx1P18111 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC15.42■□□□□ 0.06
Cdx1P18111 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC15.42■□□□□ 0.06
Cdx1P18111 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Cdx1P18111 AC117245.4-201ENSMUST00000217388 1646 ntBASIC15.42■□□□□ 0.06
Cdx1P18111 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Cdx1P18111 AC154231.1-201ENSMUST00000220564 2175 ntBASIC15.42■□□□□ 0.06
Cdx1P18111 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Cdx1P18111 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Cdx1P18111 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Cdx1P18111 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Cdx1P18111 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Cdx1P18111 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Cdx1P18111 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Cdx1P18111 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Cdx1P18111 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Cdx1P18111 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Cdx1P18111 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Cdx1P18111 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Cdx1P18111 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms