Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Msx1P13297 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Msx1P13297 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Msx1P13297 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Msx1P13297 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Msx1P13297 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
Msx1P13297 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC18.27■□□□□ 0.52
Msx1P13297 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Msx1P13297 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.51
Msx1P13297 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC18.27■□□□□ 0.51
Msx1P13297 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Msx1P13297 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Msx1P13297 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Msx1P13297 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Msx1P13297 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC18.26■□□□□ 0.51
Msx1P13297 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Msx1P13297 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC18.26■□□□□ 0.51
Msx1P13297 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Msx1P13297 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC18.26■□□□□ 0.51
Msx1P13297 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Msx1P13297 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Msx1P13297 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Msx1P13297 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Msx1P13297 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Msx1P13297 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Msx1P13297 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Msx1P13297 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Msx1P13297 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Msx1P13297 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Msx1P13297 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Msx1P13297 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Msx1P13297 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Msx1P13297 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Msx1P13297 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC18.24■□□□□ 0.51
Msx1P13297 Cdkn3-203ENSMUST00000227149 1952 ntBASIC18.24■□□□□ 0.51
Msx1P13297 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Msx1P13297 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Msx1P13297 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Msx1P13297 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Msx1P13297 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Msx1P13297 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Msx1P13297 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
Msx1P13297 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Msx1P13297 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Msx1P13297 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC18.24■□□□□ 0.51
Msx1P13297 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC18.24■□□□□ 0.51
Msx1P13297 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC18.24■□□□□ 0.51
Msx1P13297 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Msx1P13297 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC18.24■□□□□ 0.51
Msx1P13297 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Msx1P13297 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Msx1P13297 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
Msx1P13297 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC18.23■□□□□ 0.51
Msx1P13297 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Msx1P13297 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Msx1P13297 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Msx1P13297 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Msx1P13297 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Msx1P13297 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Msx1P13297 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Msx1P13297 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC18.22■□□□□ 0.51
Msx1P13297 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Msx1P13297 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Msx1P13297 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC18.22■□□□□ 0.51
Msx1P13297 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Msx1P13297 Gm9988-201ENSMUST00000069786 435 ntBASIC18.22■□□□□ 0.51
Msx1P13297 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Msx1P13297 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Msx1P13297 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Msx1P13297 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Msx1P13297 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Msx1P13297 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Msx1P13297 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Msx1P13297 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC18.21■□□□□ 0.51
Msx1P13297 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Msx1P13297 Gm6802-201ENSMUST00000167843 1983 ntBASIC18.21■□□□□ 0.51
Msx1P13297 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Msx1P13297 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Msx1P13297 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
Msx1P13297 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC18.21■□□□□ 0.51
Msx1P13297 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Msx1P13297 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC18.21■□□□□ 0.51
Msx1P13297 AC137127.1-201ENSMUST00000213466 1078 ntBASIC18.21■□□□□ 0.51
Msx1P13297 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Msx1P13297 Notumos-201ENSMUST00000151998 2659 ntBASIC18.21■□□□□ 0.51
Msx1P13297 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Msx1P13297 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Msx1P13297 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Msx1P13297 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Msx1P13297 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Msx1P13297 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
Msx1P13297 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Msx1P13297 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Msx1P13297 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Msx1P13297 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Msx1P13297 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Msx1P13297 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Msx1P13297 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Msx1P13297 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Msx1P13297 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 125.8 ms