Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RaraP11416 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RaraP11416 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RaraP11416 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
RaraP11416 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RaraP11416 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RaraP11416 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
RaraP11416 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
RaraP11416 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RaraP11416 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RaraP11416 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
RaraP11416 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RaraP11416 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
RaraP11416 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
RaraP11416 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RaraP11416 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
RaraP11416 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RaraP11416 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
RaraP11416 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.93
RaraP11416 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
RaraP11416 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RaraP11416 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
RaraP11416 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
RaraP11416 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
RaraP11416 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
RaraP11416 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC20.82■□□□□ 0.92
RaraP11416 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
RaraP11416 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RaraP11416 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RaraP11416 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RaraP11416 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
RaraP11416 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RaraP11416 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RaraP11416 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RaraP11416 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
RaraP11416 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC20.81■□□□□ 0.92
RaraP11416 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
RaraP11416 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RaraP11416 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
RaraP11416 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC20.81■□□□□ 0.92
RaraP11416 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RaraP11416 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RaraP11416 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RaraP11416 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RaraP11416 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RaraP11416 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RaraP11416 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RaraP11416 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RaraP11416 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RaraP11416 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RaraP11416 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RaraP11416 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
RaraP11416 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
RaraP11416 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RaraP11416 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
RaraP11416 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RaraP11416 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RaraP11416 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RaraP11416 Rncr4-201ENSMUST00000194541 2234 ntBASIC20.8■□□□□ 0.92
RaraP11416 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
RaraP11416 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC20.79■□□□□ 0.92
RaraP11416 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
RaraP11416 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
RaraP11416 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
RaraP11416 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
RaraP11416 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC20.79■□□□□ 0.92
RaraP11416 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC20.79■□□□□ 0.92
RaraP11416 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
RaraP11416 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RaraP11416 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
RaraP11416 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RaraP11416 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
RaraP11416 BC021767-201ENSMUST00000126387 1716 ntBASIC20.78■□□□□ 0.92
RaraP11416 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC20.78■□□□□ 0.92
RaraP11416 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
RaraP11416 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
RaraP11416 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
RaraP11416 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
RaraP11416 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC20.78■□□□□ 0.92
RaraP11416 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
RaraP11416 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RaraP11416 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC20.78■□□□□ 0.92
RaraP11416 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RaraP11416 Gm38342-201ENSMUST00000195710 2980 ntBASIC20.77■□□□□ 0.92
RaraP11416 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
RaraP11416 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
RaraP11416 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
RaraP11416 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC20.77■□□□□ 0.92
RaraP11416 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RaraP11416 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
RaraP11416 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RaraP11416 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RaraP11416 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
RaraP11416 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
RaraP11416 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
RaraP11416 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
RaraP11416 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RaraP11416 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC20.76■□□□□ 0.91
RaraP11416 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RaraP11416 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms