Protein–RNA interactions for Protein: A0A0J9YTW6

Scn2a, Sodium channel protein, mousemouse

Predictions only

Length 2,006 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn2aA0A0J9YTW6 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Scn2aA0A0J9YTW6 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Scn2aA0A0J9YTW6 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Scn2aA0A0J9YTW6 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
Scn2aA0A0J9YTW6 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Scn2aA0A0J9YTW6 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Scn2aA0A0J9YTW6 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Scn2aA0A0J9YTW6 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Scn2aA0A0J9YTW6 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Scn2aA0A0J9YTW6 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Scn2aA0A0J9YTW6 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Scn2aA0A0J9YTW6 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Scn2aA0A0J9YTW6 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Scn2aA0A0J9YTW6 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Scn2aA0A0J9YTW6 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Scn2aA0A0J9YTW6 Reep4-203ENSMUST00000226563 1444 ntBASIC17.75■□□□□ 0.43
Scn2aA0A0J9YTW6 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Scn2aA0A0J9YTW6 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Scn2aA0A0J9YTW6 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Scn2aA0A0J9YTW6 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC17.75■□□□□ 0.43
Scn2aA0A0J9YTW6 AC164629.5-201ENSMUST00000220387 632 ntBASIC17.75■□□□□ 0.43
Scn2aA0A0J9YTW6 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Scn2aA0A0J9YTW6 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC17.75■□□□□ 0.43
Scn2aA0A0J9YTW6 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Scn2aA0A0J9YTW6 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Scn2aA0A0J9YTW6 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Scn2aA0A0J9YTW6 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Scn2aA0A0J9YTW6 Gm8495-201ENSMUST00000188740 694 ntBASIC17.74■□□□□ 0.43
Scn2aA0A0J9YTW6 Slc35b2-207ENSMUST00000226086 850 ntBASIC17.74■□□□□ 0.43
Scn2aA0A0J9YTW6 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Scn2aA0A0J9YTW6 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC17.74■□□□□ 0.43
Scn2aA0A0J9YTW6 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Scn2aA0A0J9YTW6 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Scn2aA0A0J9YTW6 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn2aA0A0J9YTW6 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn2aA0A0J9YTW6 Gm20100-201ENSMUST00000209418 2272 ntBASIC17.73■□□□□ 0.43
Scn2aA0A0J9YTW6 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC17.73■□□□□ 0.43
Scn2aA0A0J9YTW6 Gm9988-201ENSMUST00000069786 435 ntBASIC17.73■□□□□ 0.43
Scn2aA0A0J9YTW6 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Scn2aA0A0J9YTW6 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn2aA0A0J9YTW6 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn2aA0A0J9YTW6 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Scn2aA0A0J9YTW6 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn2aA0A0J9YTW6 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Scn2aA0A0J9YTW6 Gm42642-201ENSMUST00000200683 355 ntBASIC17.72■□□□□ 0.43
Scn2aA0A0J9YTW6 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Scn2aA0A0J9YTW6 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Scn2aA0A0J9YTW6 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
Scn2aA0A0J9YTW6 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Scn2aA0A0J9YTW6 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Scn2aA0A0J9YTW6 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Scn2aA0A0J9YTW6 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Scn2aA0A0J9YTW6 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Scn2aA0A0J9YTW6 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC17.72■□□□□ 0.43
Scn2aA0A0J9YTW6 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Scn2aA0A0J9YTW6 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Scn2aA0A0J9YTW6 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Scn2aA0A0J9YTW6 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Scn2aA0A0J9YTW6 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC17.72■□□□□ 0.43
Scn2aA0A0J9YTW6 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC17.72■□□□□ 0.43
Scn2aA0A0J9YTW6 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC17.72■□□□□ 0.43
Scn2aA0A0J9YTW6 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Scn2aA0A0J9YTW6 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Scn2aA0A0J9YTW6 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Scn2aA0A0J9YTW6 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC17.72■□□□□ 0.43
Scn2aA0A0J9YTW6 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Scn2aA0A0J9YTW6 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Scn2aA0A0J9YTW6 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Scn2aA0A0J9YTW6 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Scn2aA0A0J9YTW6 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Scn2aA0A0J9YTW6 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC17.71■□□□□ 0.43
Scn2aA0A0J9YTW6 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Scn2aA0A0J9YTW6 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Scn2aA0A0J9YTW6 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Scn2aA0A0J9YTW6 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC17.71■□□□□ 0.43
Scn2aA0A0J9YTW6 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Scn2aA0A0J9YTW6 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
Scn2aA0A0J9YTW6 Gm5297-201ENSMUST00000198555 1171 ntBASIC17.71■□□□□ 0.42
Scn2aA0A0J9YTW6 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Scn2aA0A0J9YTW6 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn2aA0A0J9YTW6 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn2aA0A0J9YTW6 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn2aA0A0J9YTW6 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn2aA0A0J9YTW6 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn2aA0A0J9YTW6 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn2aA0A0J9YTW6 Gm13234-201ENSMUST00000120010 747 ntBASIC17.7■□□□□ 0.42
Scn2aA0A0J9YTW6 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC17.7■□□□□ 0.42
Scn2aA0A0J9YTW6 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC17.7■□□□□ 0.42
Scn2aA0A0J9YTW6 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn2aA0A0J9YTW6 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn2aA0A0J9YTW6 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn2aA0A0J9YTW6 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Scn2aA0A0J9YTW6 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC17.69■□□□□ 0.42
Scn2aA0A0J9YTW6 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Scn2aA0A0J9YTW6 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Scn2aA0A0J9YTW6 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Scn2aA0A0J9YTW6 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Scn2aA0A0J9YTW6 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Scn2aA0A0J9YTW6 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC17.69■□□□□ 0.42
Scn2aA0A0J9YTW6 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms