Protein–RNA interactions for Protein: A0A0B4J1H5

Trbv20, T cell receptor beta, variable 20 (Fragment), mousemouse

Predictions only

Length 111 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv20A0A0B4J1H5 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Trbv20A0A0B4J1H5 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trbv20A0A0B4J1H5 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trbv20A0A0B4J1H5 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trbv20A0A0B4J1H5 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trbv20A0A0B4J1H5 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC17.27■□□□□ 0.36
Trbv20A0A0B4J1H5 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trbv20A0A0B4J1H5 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trbv20A0A0B4J1H5 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC17.27■□□□□ 0.36
Trbv20A0A0B4J1H5 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trbv20A0A0B4J1H5 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trbv20A0A0B4J1H5 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trbv20A0A0B4J1H5 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trbv20A0A0B4J1H5 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trbv20A0A0B4J1H5 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trbv20A0A0B4J1H5 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Trbv20A0A0B4J1H5 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC17.27■□□□□ 0.35
Trbv20A0A0B4J1H5 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Trbv20A0A0B4J1H5 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv20A0A0B4J1H5 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv20A0A0B4J1H5 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv20A0A0B4J1H5 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv20A0A0B4J1H5 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv20A0A0B4J1H5 Nsd1-203ENSMUST00000224156 1149 ntBASIC17.26■□□□□ 0.35
Trbv20A0A0B4J1H5 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv20A0A0B4J1H5 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv20A0A0B4J1H5 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC17.26■□□□□ 0.35
Trbv20A0A0B4J1H5 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv20A0A0B4J1H5 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv20A0A0B4J1H5 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Trbv20A0A0B4J1H5 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv20A0A0B4J1H5 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv20A0A0B4J1H5 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv20A0A0B4J1H5 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv20A0A0B4J1H5 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Trbv20A0A0B4J1H5 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv20A0A0B4J1H5 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv20A0A0B4J1H5 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv20A0A0B4J1H5 Gm44832-201ENSMUST00000208849 2303 ntBASIC17.25■□□□□ 0.35
Trbv20A0A0B4J1H5 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv20A0A0B4J1H5 Gm45141-201ENSMUST00000206502 1888 ntBASIC17.25■□□□□ 0.35
Trbv20A0A0B4J1H5 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv20A0A0B4J1H5 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv20A0A0B4J1H5 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC17.25■□□□□ 0.35
Trbv20A0A0B4J1H5 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv20A0A0B4J1H5 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC17.25■□□□□ 0.35
Trbv20A0A0B4J1H5 Gm45444-201ENSMUST00000211394 898 ntBASIC17.25■□□□□ 0.35
Trbv20A0A0B4J1H5 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
Trbv20A0A0B4J1H5 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC17.25■□□□□ 0.35
Trbv20A0A0B4J1H5 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv20A0A0B4J1H5 AA386476-201ENSMUST00000098781 1665 ntBASIC17.25■□□□□ 0.35
Trbv20A0A0B4J1H5 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv20A0A0B4J1H5 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv20A0A0B4J1H5 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv20A0A0B4J1H5 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv20A0A0B4J1H5 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC17.25■□□□□ 0.35
Trbv20A0A0B4J1H5 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv20A0A0B4J1H5 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv20A0A0B4J1H5 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trbv20A0A0B4J1H5 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trbv20A0A0B4J1H5 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trbv20A0A0B4J1H5 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trbv20A0A0B4J1H5 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trbv20A0A0B4J1H5 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trbv20A0A0B4J1H5 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trbv20A0A0B4J1H5 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trbv20A0A0B4J1H5 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC17.24■□□□□ 0.35
Trbv20A0A0B4J1H5 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC17.24■□□□□ 0.35
Trbv20A0A0B4J1H5 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
Trbv20A0A0B4J1H5 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Trbv20A0A0B4J1H5 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Trbv20A0A0B4J1H5 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
Trbv20A0A0B4J1H5 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trbv20A0A0B4J1H5 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trbv20A0A0B4J1H5 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trbv20A0A0B4J1H5 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Trbv20A0A0B4J1H5 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Trbv20A0A0B4J1H5 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Trbv20A0A0B4J1H5 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC17.23■□□□□ 0.35
Trbv20A0A0B4J1H5 Gm5067-201ENSMUST00000170449 1009 ntBASIC17.23■□□□□ 0.35
Trbv20A0A0B4J1H5 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trbv20A0A0B4J1H5 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trbv20A0A0B4J1H5 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Trbv20A0A0B4J1H5 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trbv20A0A0B4J1H5 Gm37352-201ENSMUST00000193908 2181 ntBASIC17.23■□□□□ 0.35
Trbv20A0A0B4J1H5 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trbv20A0A0B4J1H5 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trbv20A0A0B4J1H5 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trbv20A0A0B4J1H5 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC17.23■□□□□ 0.35
Trbv20A0A0B4J1H5 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trbv20A0A0B4J1H5 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trbv20A0A0B4J1H5 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trbv20A0A0B4J1H5 Gm45606-201ENSMUST00000209836 2795 ntBASIC17.23■□□□□ 0.35
Trbv20A0A0B4J1H5 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
Trbv20A0A0B4J1H5 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trbv20A0A0B4J1H5 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Trbv20A0A0B4J1H5 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trbv20A0A0B4J1H5 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Trbv20A0A0B4J1H5 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trbv20A0A0B4J1H5 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms