Protein–RNA interactions for Protein: Q9R060

Nubp1, Cytosolic Fe-S cluster assembly factor NUBP1, mousemouse

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nubp1Q9R060 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Nubp1Q9R060 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
Nubp1Q9R060 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
Nubp1Q9R060 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Nubp1Q9R060 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
Nubp1Q9R060 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC16.86■□□□□ 0.29
Nubp1Q9R060 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Nubp1Q9R060 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Nubp1Q9R060 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
Nubp1Q9R060 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Nubp1Q9R060 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Nubp1Q9R060 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Nubp1Q9R060 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Nubp1Q9R060 Gm43006-201ENSMUST00000197702 1602 ntBASIC16.85■□□□□ 0.29
Nubp1Q9R060 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
Nubp1Q9R060 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Nubp1Q9R060 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC16.85■□□□□ 0.29
Nubp1Q9R060 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC16.85■□□□□ 0.29
Nubp1Q9R060 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC16.85■□□□□ 0.29
Nubp1Q9R060 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC16.85■□□□□ 0.29
Nubp1Q9R060 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Nubp1Q9R060 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Nubp1Q9R060 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Nubp1Q9R060 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC16.84■□□□□ 0.29
Nubp1Q9R060 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC16.84■□□□□ 0.29
Nubp1Q9R060 AC164883.3-201ENSMUST00000227396 1774 ntBASIC16.84■□□□□ 0.29
Nubp1Q9R060 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Nubp1Q9R060 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Nubp1Q9R060 Gm37415-201ENSMUST00000192265 2054 ntBASIC16.84■□□□□ 0.29
Nubp1Q9R060 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Nubp1Q9R060 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
Nubp1Q9R060 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Nubp1Q9R060 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC16.84■□□□□ 0.29
Nubp1Q9R060 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Nubp1Q9R060 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Nubp1Q9R060 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Nubp1Q9R060 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Nubp1Q9R060 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
Nubp1Q9R060 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Nubp1Q9R060 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
Nubp1Q9R060 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Nubp1Q9R060 Gm13148-201ENSMUST00000118892 745 ntBASIC16.83■□□□□ 0.28
Nubp1Q9R060 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC16.83■□□□□ 0.28
Nubp1Q9R060 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC16.83■□□□□ 0.28
Nubp1Q9R060 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Nubp1Q9R060 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC16.83■□□□□ 0.28
Nubp1Q9R060 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Nubp1Q9R060 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Nubp1Q9R060 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Nubp1Q9R060 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Nubp1Q9R060 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Nubp1Q9R060 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Nubp1Q9R060 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
Nubp1Q9R060 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Nubp1Q9R060 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Nubp1Q9R060 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC16.82■□□□□ 0.28
Nubp1Q9R060 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Nubp1Q9R060 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Nubp1Q9R060 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC16.82■□□□□ 0.28
Nubp1Q9R060 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Nubp1Q9R060 Gm6365-201ENSMUST00000054711 744 ntBASIC16.82■□□□□ 0.28
Nubp1Q9R060 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Nubp1Q9R060 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Nubp1Q9R060 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Nubp1Q9R060 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Nubp1Q9R060 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Nubp1Q9R060 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
Nubp1Q9R060 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Nubp1Q9R060 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Nubp1Q9R060 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Nubp1Q9R060 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Nubp1Q9R060 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Nubp1Q9R060 Gm13146-201ENSMUST00000118508 780 ntBASIC16.81■□□□□ 0.28
Nubp1Q9R060 AC073947.1-201ENSMUST00000216991 649 ntBASIC16.81■□□□□ 0.28
Nubp1Q9R060 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Nubp1Q9R060 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
Nubp1Q9R060 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Nubp1Q9R060 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Nubp1Q9R060 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
Nubp1Q9R060 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Nubp1Q9R060 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Nubp1Q9R060 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC16.8■□□□□ 0.28
Nubp1Q9R060 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Nubp1Q9R060 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Nubp1Q9R060 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Nubp1Q9R060 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Nubp1Q9R060 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Nubp1Q9R060 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Nubp1Q9R060 Mir6982-201ENSMUST00000184354 68 ntBASIC16.79■□□□□ 0.28
Nubp1Q9R060 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Nubp1Q9R060 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Nubp1Q9R060 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Nubp1Q9R060 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Nubp1Q9R060 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Nubp1Q9R060 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Nubp1Q9R060 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Nubp1Q9R060 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Nubp1Q9R060 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Nubp1Q9R060 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Nubp1Q9R060 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 17.3 ms