Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim54Q9ERP3 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Trim54Q9ERP3 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim54Q9ERP3 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Trim54Q9ERP3 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Trim54Q9ERP3 AA386476-201ENSMUST00000098781 1665 ntBASIC20.99■□□□□ 0.95
Trim54Q9ERP3 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim54Q9ERP3 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC20.99■□□□□ 0.95
Trim54Q9ERP3 Gm15043-201ENSMUST00000118843 1543 ntBASIC20.99■□□□□ 0.95
Trim54Q9ERP3 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim54Q9ERP3 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim54Q9ERP3 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Trim54Q9ERP3 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC20.98■□□□□ 0.95
Trim54Q9ERP3 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Trim54Q9ERP3 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim54Q9ERP3 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Trim54Q9ERP3 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Trim54Q9ERP3 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC20.98■□□□□ 0.95
Trim54Q9ERP3 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim54Q9ERP3 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim54Q9ERP3 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim54Q9ERP3 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim54Q9ERP3 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC20.97■□□□□ 0.95
Trim54Q9ERP3 AC154266.1-201ENSMUST00000223190 503 ntBASIC20.97■□□□□ 0.95
Trim54Q9ERP3 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim54Q9ERP3 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim54Q9ERP3 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim54Q9ERP3 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Trim54Q9ERP3 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim54Q9ERP3 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim54Q9ERP3 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Trim54Q9ERP3 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim54Q9ERP3 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Trim54Q9ERP3 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Trim54Q9ERP3 Gm38205-201ENSMUST00000192243 258 ntBASIC20.96■□□□□ 0.95
Trim54Q9ERP3 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Trim54Q9ERP3 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC20.96■□□□□ 0.95
Trim54Q9ERP3 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim54Q9ERP3 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim54Q9ERP3 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Trim54Q9ERP3 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim54Q9ERP3 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC20.96■□□□□ 0.95
Trim54Q9ERP3 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Trim54Q9ERP3 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
Trim54Q9ERP3 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Trim54Q9ERP3 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Trim54Q9ERP3 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim54Q9ERP3 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC20.95■□□□□ 0.94
Trim54Q9ERP3 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Trim54Q9ERP3 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim54Q9ERP3 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim54Q9ERP3 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim54Q9ERP3 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim54Q9ERP3 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim54Q9ERP3 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
Trim54Q9ERP3 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC20.95■□□□□ 0.94
Trim54Q9ERP3 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim54Q9ERP3 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC20.94■□□□□ 0.94
Trim54Q9ERP3 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
Trim54Q9ERP3 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Trim54Q9ERP3 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim54Q9ERP3 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC20.94■□□□□ 0.94
Trim54Q9ERP3 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim54Q9ERP3 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim54Q9ERP3 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim54Q9ERP3 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Trim54Q9ERP3 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Trim54Q9ERP3 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim54Q9ERP3 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC20.93■□□□□ 0.94
Trim54Q9ERP3 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Trim54Q9ERP3 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Trim54Q9ERP3 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim54Q9ERP3 Gm12669-201ENSMUST00000122162 1009 ntBASIC20.92■□□□□ 0.94
Trim54Q9ERP3 Gm42555-201ENSMUST00000199304 1039 ntBASIC20.92■□□□□ 0.94
Trim54Q9ERP3 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Trim54Q9ERP3 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
Trim54Q9ERP3 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Trim54Q9ERP3 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Trim54Q9ERP3 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Trim54Q9ERP3 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim54Q9ERP3 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Trim54Q9ERP3 Gm13146-201ENSMUST00000118508 780 ntBASIC20.91■□□□□ 0.94
Trim54Q9ERP3 Gm43909-201ENSMUST00000203443 1876 ntBASIC20.91■□□□□ 0.94
Trim54Q9ERP3 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC20.91■□□□□ 0.94
Trim54Q9ERP3 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim54Q9ERP3 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
Trim54Q9ERP3 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim54Q9ERP3 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim54Q9ERP3 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim54Q9ERP3 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim54Q9ERP3 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
Trim54Q9ERP3 CT010467.1-202ENSMUST00000205406 714 ntBASIC20.9■□□□□ 0.94
Trim54Q9ERP3 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim54Q9ERP3 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Trim54Q9ERP3 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim54Q9ERP3 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim54Q9ERP3 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC20.9■□□□□ 0.94
Trim54Q9ERP3 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC20.89■□□□□ 0.94
Trim54Q9ERP3 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Trim54Q9ERP3 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms