Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Lima1Q9ERG0 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Lima1Q9ERG0 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
Lima1Q9ERG0 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC19.05■□□□□ 0.64
Lima1Q9ERG0 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Lima1Q9ERG0 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC19.05■□□□□ 0.64
Lima1Q9ERG0 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC19.05■□□□□ 0.64
Lima1Q9ERG0 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
Lima1Q9ERG0 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Lima1Q9ERG0 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Lima1Q9ERG0 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
Lima1Q9ERG0 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Lima1Q9ERG0 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC19.05■□□□□ 0.64
Lima1Q9ERG0 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Lima1Q9ERG0 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Lima1Q9ERG0 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Lima1Q9ERG0 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Lima1Q9ERG0 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Lima1Q9ERG0 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Lima1Q9ERG0 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC19.04■□□□□ 0.64
Lima1Q9ERG0 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC19.04■□□□□ 0.64
Lima1Q9ERG0 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC19.04■□□□□ 0.64
Lima1Q9ERG0 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Lima1Q9ERG0 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC19.04■□□□□ 0.64
Lima1Q9ERG0 Gm10657-201ENSMUST00000193528 1031 ntBASIC19.04■□□□□ 0.64
Lima1Q9ERG0 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Lima1Q9ERG0 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC19.04■□□□□ 0.64
Lima1Q9ERG0 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC19.04■□□□□ 0.64
Lima1Q9ERG0 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC19.03■□□□□ 0.64
Lima1Q9ERG0 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Lima1Q9ERG0 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
Lima1Q9ERG0 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Lima1Q9ERG0 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Lima1Q9ERG0 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC19.03■□□□□ 0.64
Lima1Q9ERG0 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
Lima1Q9ERG0 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
Lima1Q9ERG0 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC19.03■□□□□ 0.64
Lima1Q9ERG0 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC19.03■□□□□ 0.64
Lima1Q9ERG0 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Lima1Q9ERG0 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC19.02■□□□□ 0.64
Lima1Q9ERG0 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Lima1Q9ERG0 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Lima1Q9ERG0 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC19.02■□□□□ 0.64
Lima1Q9ERG0 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
Lima1Q9ERG0 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Lima1Q9ERG0 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC19.02■□□□□ 0.64
Lima1Q9ERG0 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC19.02■□□□□ 0.64
Lima1Q9ERG0 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
Lima1Q9ERG0 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
Lima1Q9ERG0 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC19.02■□□□□ 0.64
Lima1Q9ERG0 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
Lima1Q9ERG0 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.63
Lima1Q9ERG0 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Lima1Q9ERG0 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC19.01■□□□□ 0.63
Lima1Q9ERG0 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC19.01■□□□□ 0.63
Lima1Q9ERG0 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Lima1Q9ERG0 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Lima1Q9ERG0 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Lima1Q9ERG0 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Lima1Q9ERG0 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Lima1Q9ERG0 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Lima1Q9ERG0 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Lima1Q9ERG0 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Lima1Q9ERG0 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Lima1Q9ERG0 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC19.01■□□□□ 0.63
Lima1Q9ERG0 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Lima1Q9ERG0 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Lima1Q9ERG0 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Lima1Q9ERG0 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Lima1Q9ERG0 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC19■□□□□ 0.63
Lima1Q9ERG0 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Lima1Q9ERG0 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Lima1Q9ERG0 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC19■□□□□ 0.63
Lima1Q9ERG0 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Lima1Q9ERG0 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Lima1Q9ERG0 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Lima1Q9ERG0 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Lima1Q9ERG0 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Lima1Q9ERG0 Gm20100-201ENSMUST00000209418 2272 ntBASIC19■□□□□ 0.63
Lima1Q9ERG0 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Lima1Q9ERG0 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Lima1Q9ERG0 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Lima1Q9ERG0 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Lima1Q9ERG0 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Lima1Q9ERG0 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Lima1Q9ERG0 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Lima1Q9ERG0 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC19■□□□□ 0.63
Lima1Q9ERG0 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC19■□□□□ 0.63
Lima1Q9ERG0 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Lima1Q9ERG0 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC19■□□□□ 0.63
Lima1Q9ERG0 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Lima1Q9ERG0 Gm38342-201ENSMUST00000195710 2980 ntBASIC18.99■□□□□ 0.63
Lima1Q9ERG0 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Lima1Q9ERG0 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Lima1Q9ERG0 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Lima1Q9ERG0 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
Lima1Q9ERG0 Gm43530-201ENSMUST00000195920 274 ntBASIC18.99■□□□□ 0.63
Lima1Q9ERG0 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Lima1Q9ERG0 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Lima1Q9ERG0 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms