Protein–RNA interactions for Protein: Q9CR29

Ccdc43, Coiled-coil domain-containing protein 43, mousemouse

Known RBP Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc43Q9CR29 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ccdc43Q9CR29 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
Ccdc43Q9CR29 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ccdc43Q9CR29 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Ccdc43Q9CR29 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ccdc43Q9CR29 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ccdc43Q9CR29 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
Ccdc43Q9CR29 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC21.48■■□□□ 1.03
Ccdc43Q9CR29 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ccdc43Q9CR29 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC21.48■■□□□ 1.03
Ccdc43Q9CR29 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC21.48■■□□□ 1.03
Ccdc43Q9CR29 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ccdc43Q9CR29 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ccdc43Q9CR29 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Ccdc43Q9CR29 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Ccdc43Q9CR29 Gm43545-201ENSMUST00000196765 2779 ntBASIC21.48■■□□□ 1.03
Ccdc43Q9CR29 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ccdc43Q9CR29 Gm27045-201ENSMUST00000182145 1402 ntBASIC21.47■■□□□ 1.03
Ccdc43Q9CR29 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Ccdc43Q9CR29 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Ccdc43Q9CR29 AC140930.3-201ENSMUST00000222935 274 ntBASIC21.47■■□□□ 1.03
Ccdc43Q9CR29 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC21.47■■□□□ 1.03
Ccdc43Q9CR29 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Ccdc43Q9CR29 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Ccdc43Q9CR29 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC21.47■■□□□ 1.03
Ccdc43Q9CR29 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ccdc43Q9CR29 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC21.47■■□□□ 1.03
Ccdc43Q9CR29 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ccdc43Q9CR29 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ccdc43Q9CR29 Cdkn3-203ENSMUST00000227149 1952 ntBASIC21.47■■□□□ 1.03
Ccdc43Q9CR29 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Ccdc43Q9CR29 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ccdc43Q9CR29 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ccdc43Q9CR29 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC21.46■■□□□ 1.03
Ccdc43Q9CR29 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
Ccdc43Q9CR29 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ccdc43Q9CR29 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ccdc43Q9CR29 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC21.46■■□□□ 1.03
Ccdc43Q9CR29 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ccdc43Q9CR29 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC21.46■■□□□ 1.03
Ccdc43Q9CR29 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ccdc43Q9CR29 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ccdc43Q9CR29 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Ccdc43Q9CR29 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ccdc43Q9CR29 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC21.46■■□□□ 1.03
Ccdc43Q9CR29 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
Ccdc43Q9CR29 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Ccdc43Q9CR29 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ccdc43Q9CR29 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ccdc43Q9CR29 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ccdc43Q9CR29 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC21.45■■□□□ 1.02
Ccdc43Q9CR29 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC21.45■■□□□ 1.02
Ccdc43Q9CR29 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Ccdc43Q9CR29 Gm13241-201ENSMUST00000094493 780 ntBASIC21.45■■□□□ 1.02
Ccdc43Q9CR29 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ccdc43Q9CR29 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ccdc43Q9CR29 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Ccdc43Q9CR29 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Ccdc43Q9CR29 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ccdc43Q9CR29 Gm6802-201ENSMUST00000167843 1983 ntBASIC21.45■■□□□ 1.02
Ccdc43Q9CR29 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ccdc43Q9CR29 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Ccdc43Q9CR29 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ccdc43Q9CR29 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ccdc43Q9CR29 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC21.44■■□□□ 1.02
Ccdc43Q9CR29 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ccdc43Q9CR29 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ccdc43Q9CR29 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ccdc43Q9CR29 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC21.43■■□□□ 1.02
Ccdc43Q9CR29 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
Ccdc43Q9CR29 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ccdc43Q9CR29 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
Ccdc43Q9CR29 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Ccdc43Q9CR29 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ccdc43Q9CR29 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Ccdc43Q9CR29 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
Ccdc43Q9CR29 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC21.42■■□□□ 1.02
Ccdc43Q9CR29 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC21.42■■□□□ 1.02
Ccdc43Q9CR29 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
Ccdc43Q9CR29 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ccdc43Q9CR29 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Ccdc43Q9CR29 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ccdc43Q9CR29 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
Ccdc43Q9CR29 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC21.41■■□□□ 1.02
Ccdc43Q9CR29 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ccdc43Q9CR29 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
Ccdc43Q9CR29 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Ccdc43Q9CR29 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
Ccdc43Q9CR29 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ccdc43Q9CR29 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC21.4■■□□□ 1.02
Ccdc43Q9CR29 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ccdc43Q9CR29 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC21.4■■□□□ 1.02
Ccdc43Q9CR29 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ccdc43Q9CR29 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC21.4■■□□□ 1.02
Ccdc43Q9CR29 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC21.4■■□□□ 1.02
Ccdc43Q9CR29 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC21.4■■□□□ 1.02
Ccdc43Q9CR29 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ccdc43Q9CR29 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ccdc43Q9CR29 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ccdc43Q9CR29 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms