Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC18.82■□□□□ 0.6
Msh4Q99MT2 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Msh4Q99MT2 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Msh4Q99MT2 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Msh4Q99MT2 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Msh4Q99MT2 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Msh4Q99MT2 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Msh4Q99MT2 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msh4Q99MT2 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msh4Q99MT2 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msh4Q99MT2 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Msh4Q99MT2 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msh4Q99MT2 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
Msh4Q99MT2 Gm2011-201ENSMUST00000203124 1263 ntBASIC18.81■□□□□ 0.6
Msh4Q99MT2 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
Msh4Q99MT2 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
Msh4Q99MT2 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msh4Q99MT2 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msh4Q99MT2 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Msh4Q99MT2 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Msh4Q99MT2 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Msh4Q99MT2 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Msh4Q99MT2 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Msh4Q99MT2 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
Msh4Q99MT2 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Msh4Q99MT2 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Msh4Q99MT2 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Msh4Q99MT2 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC18.79■□□□□ 0.6
Msh4Q99MT2 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Msh4Q99MT2 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Msh4Q99MT2 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Msh4Q99MT2 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Msh4Q99MT2 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC18.79■□□□□ 0.6
Msh4Q99MT2 Flvcr1-202ENSMUST00000191946 1216 ntBASIC18.79■□□□□ 0.6
Msh4Q99MT2 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC18.79■□□□□ 0.6
Msh4Q99MT2 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Msh4Q99MT2 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Msh4Q99MT2 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Msh4Q99MT2 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Msh4Q99MT2 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
Msh4Q99MT2 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Msh4Q99MT2 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Msh4Q99MT2 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Msh4Q99MT2 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Msh4Q99MT2 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC18.78■□□□□ 0.6
Msh4Q99MT2 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Msh4Q99MT2 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Msh4Q99MT2 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC18.78■□□□□ 0.6
Msh4Q99MT2 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Msh4Q99MT2 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Msh4Q99MT2 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Msh4Q99MT2 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Msh4Q99MT2 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Msh4Q99MT2 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Msh4Q99MT2 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Msh4Q99MT2 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC18.77■□□□□ 0.6
Msh4Q99MT2 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Msh4Q99MT2 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
Msh4Q99MT2 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Msh4Q99MT2 Gm21168-201ENSMUST00000199646 1096 ntBASIC18.77■□□□□ 0.6
Msh4Q99MT2 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Msh4Q99MT2 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Msh4Q99MT2 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Msh4Q99MT2 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC18.77■□□□□ 0.59
Msh4Q99MT2 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Msh4Q99MT2 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC18.77■□□□□ 0.59
Msh4Q99MT2 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Msh4Q99MT2 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Msh4Q99MT2 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC18.76■□□□□ 0.59
Msh4Q99MT2 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Msh4Q99MT2 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Msh4Q99MT2 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Msh4Q99MT2 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Msh4Q99MT2 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Msh4Q99MT2 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Msh4Q99MT2 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Msh4Q99MT2 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC18.75■□□□□ 0.59
Msh4Q99MT2 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC18.75■□□□□ 0.59
Msh4Q99MT2 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC18.75■□□□□ 0.59
Msh4Q99MT2 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC18.75■□□□□ 0.59
Msh4Q99MT2 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Msh4Q99MT2 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Msh4Q99MT2 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Msh4Q99MT2 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC18.75■□□□□ 0.59
Msh4Q99MT2 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC18.75■□□□□ 0.59
Msh4Q99MT2 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Msh4Q99MT2 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC18.75■□□□□ 0.59
Msh4Q99MT2 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC18.74■□□□□ 0.59
Msh4Q99MT2 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Msh4Q99MT2 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Msh4Q99MT2 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Msh4Q99MT2 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Msh4Q99MT2 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Msh4Q99MT2 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Msh4Q99MT2 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Msh4Q99MT2 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Msh4Q99MT2 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC18.74■□□□□ 0.59
Msh4Q99MT2 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Msh4Q99MT2 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Msh4Q99MT2 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC18.74■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 12.5 ms