Protein–RNA interactions for Protein: Q91Y21

Pcdha1, Protocadherin alpha 1, mousemouse

Predictions only

Length 948 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha1Q91Y21 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Pcdha1Q91Y21 Gm29257-201ENSMUST00000186115 639 ntBASIC20.24■□□□□ 0.83
Pcdha1Q91Y21 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC20.24■□□□□ 0.83
Pcdha1Q91Y21 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC20.24■□□□□ 0.83
Pcdha1Q91Y21 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC20.24■□□□□ 0.83
Pcdha1Q91Y21 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC20.24■□□□□ 0.83
Pcdha1Q91Y21 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Pcdha1Q91Y21 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Pcdha1Q91Y21 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Pcdha1Q91Y21 Cdkn3-203ENSMUST00000227149 1952 ntBASIC20.24■□□□□ 0.83
Pcdha1Q91Y21 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Pcdha1Q91Y21 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC20.23■□□□□ 0.83
Pcdha1Q91Y21 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Pcdha1Q91Y21 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Pcdha1Q91Y21 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Pcdha1Q91Y21 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC20.23■□□□□ 0.83
Pcdha1Q91Y21 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Pcdha1Q91Y21 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC20.23■□□□□ 0.83
Pcdha1Q91Y21 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Pcdha1Q91Y21 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Pcdha1Q91Y21 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Pcdha1Q91Y21 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Pcdha1Q91Y21 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC20.23■□□□□ 0.83
Pcdha1Q91Y21 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Pcdha1Q91Y21 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Pcdha1Q91Y21 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Pcdha1Q91Y21 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Pcdha1Q91Y21 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Pcdha1Q91Y21 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC20.22■□□□□ 0.83
Pcdha1Q91Y21 Gm37179-201ENSMUST00000194862 823 ntBASIC20.22■□□□□ 0.83
Pcdha1Q91Y21 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Pcdha1Q91Y21 Gm9988-201ENSMUST00000069786 435 ntBASIC20.22■□□□□ 0.83
Pcdha1Q91Y21 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC20.22■□□□□ 0.83
Pcdha1Q91Y21 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Pcdha1Q91Y21 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Pcdha1Q91Y21 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Pcdha1Q91Y21 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Pcdha1Q91Y21 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Pcdha1Q91Y21 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Pcdha1Q91Y21 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Pcdha1Q91Y21 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Pcdha1Q91Y21 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Pcdha1Q91Y21 Gm6802-201ENSMUST00000167843 1983 ntBASIC20.21■□□□□ 0.83
Pcdha1Q91Y21 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
Pcdha1Q91Y21 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Pcdha1Q91Y21 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC20.21■□□□□ 0.83
Pcdha1Q91Y21 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Pcdha1Q91Y21 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdha1Q91Y21 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdha1Q91Y21 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdha1Q91Y21 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdha1Q91Y21 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdha1Q91Y21 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdha1Q91Y21 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Pcdha1Q91Y21 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Pcdha1Q91Y21 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdha1Q91Y21 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdha1Q91Y21 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdha1Q91Y21 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC20.19■□□□□ 0.82
Pcdha1Q91Y21 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
Pcdha1Q91Y21 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Pcdha1Q91Y21 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdha1Q91Y21 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdha1Q91Y21 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC20.19■□□□□ 0.82
Pcdha1Q91Y21 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdha1Q91Y21 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Pcdha1Q91Y21 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdha1Q91Y21 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdha1Q91Y21 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdha1Q91Y21 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdha1Q91Y21 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdha1Q91Y21 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdha1Q91Y21 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Pcdha1Q91Y21 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC20.18■□□□□ 0.82
Pcdha1Q91Y21 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdha1Q91Y21 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC20.18■□□□□ 0.82
Pcdha1Q91Y21 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdha1Q91Y21 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdha1Q91Y21 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Pcdha1Q91Y21 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdha1Q91Y21 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdha1Q91Y21 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdha1Q91Y21 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdha1Q91Y21 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdha1Q91Y21 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
Pcdha1Q91Y21 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdha1Q91Y21 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdha1Q91Y21 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdha1Q91Y21 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdha1Q91Y21 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdha1Q91Y21 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC20.17■□□□□ 0.82
Pcdha1Q91Y21 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdha1Q91Y21 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdha1Q91Y21 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdha1Q91Y21 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Pcdha1Q91Y21 Gm13234-201ENSMUST00000120010 747 ntBASIC20.16■□□□□ 0.82
Pcdha1Q91Y21 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC20.16■□□□□ 0.82
Pcdha1Q91Y21 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Pcdha1Q91Y21 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC20.16■□□□□ 0.82
Pcdha1Q91Y21 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms