Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gm27405-201ENSMUST00000184201 112 ntBASIC21.74■■□□□ 1.07
Ushbp1Q8R370 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ushbp1Q8R370 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC21.74■■□□□ 1.07
Ushbp1Q8R370 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ushbp1Q8R370 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ushbp1Q8R370 AA386476-201ENSMUST00000098781 1665 ntBASIC21.73■■□□□ 1.07
Ushbp1Q8R370 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ushbp1Q8R370 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Ushbp1Q8R370 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ushbp1Q8R370 Hsf1-204ENSMUST00000226872 2104 ntBASIC21.73■■□□□ 1.07
Ushbp1Q8R370 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Ushbp1Q8R370 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ushbp1Q8R370 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ushbp1Q8R370 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ushbp1Q8R370 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC21.72■■□□□ 1.07
Ushbp1Q8R370 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ushbp1Q8R370 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC21.72■■□□□ 1.07
Ushbp1Q8R370 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ushbp1Q8R370 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
Ushbp1Q8R370 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Ushbp1Q8R370 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ushbp1Q8R370 Gm42642-201ENSMUST00000200683 355 ntBASIC21.71■■□□□ 1.07
Ushbp1Q8R370 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Ushbp1Q8R370 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ushbp1Q8R370 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ushbp1Q8R370 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC21.71■■□□□ 1.07
Ushbp1Q8R370 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
Ushbp1Q8R370 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Ushbp1Q8R370 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ushbp1Q8R370 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ushbp1Q8R370 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC21.7■■□□□ 1.06
Ushbp1Q8R370 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC21.7■■□□□ 1.06
Ushbp1Q8R370 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Ushbp1Q8R370 Spcs1-204ENSMUST00000226782 949 ntBASIC21.7■■□□□ 1.06
Ushbp1Q8R370 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
Ushbp1Q8R370 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ushbp1Q8R370 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ushbp1Q8R370 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ushbp1Q8R370 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Ushbp1Q8R370 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ushbp1Q8R370 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ushbp1Q8R370 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ushbp1Q8R370 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Ushbp1Q8R370 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
Ushbp1Q8R370 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ushbp1Q8R370 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC21.69■■□□□ 1.06
Ushbp1Q8R370 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
Ushbp1Q8R370 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ushbp1Q8R370 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ushbp1Q8R370 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Ushbp1Q8R370 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC21.68■■□□□ 1.06
Ushbp1Q8R370 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ushbp1Q8R370 Gm40848-201ENSMUST00000221998 324 ntBASIC21.68■■□□□ 1.06
Ushbp1Q8R370 AC112142.1-201ENSMUST00000228796 918 ntBASIC21.68■■□□□ 1.06
Ushbp1Q8R370 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC21.68■■□□□ 1.06
Ushbp1Q8R370 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ushbp1Q8R370 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Ushbp1Q8R370 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ushbp1Q8R370 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC21.67■■□□□ 1.06
Ushbp1Q8R370 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ushbp1Q8R370 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ushbp1Q8R370 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ushbp1Q8R370 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC21.67■■□□□ 1.06
Ushbp1Q8R370 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ushbp1Q8R370 AC099934.2-201ENSMUST00000196389 70 ntBASIC21.67■■□□□ 1.06
Ushbp1Q8R370 AC156953.1-201ENSMUST00000196953 70 ntBASIC21.67■■□□□ 1.06
Ushbp1Q8R370 AC157822.2-201ENSMUST00000200291 70 ntBASIC21.67■■□□□ 1.06
Ushbp1Q8R370 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC21.67■■□□□ 1.06
Ushbp1Q8R370 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ushbp1Q8R370 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ushbp1Q8R370 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ushbp1Q8R370 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ushbp1Q8R370 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ushbp1Q8R370 Gm20100-201ENSMUST00000209418 2272 ntBASIC21.66■■□□□ 1.06
Ushbp1Q8R370 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Ushbp1Q8R370 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Ushbp1Q8R370 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Ushbp1Q8R370 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC21.66■■□□□ 1.06
Ushbp1Q8R370 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ushbp1Q8R370 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ushbp1Q8R370 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ushbp1Q8R370 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ushbp1Q8R370 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ushbp1Q8R370 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ushbp1Q8R370 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Ushbp1Q8R370 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ushbp1Q8R370 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ushbp1Q8R370 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ushbp1Q8R370 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ushbp1Q8R370 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ushbp1Q8R370 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
Ushbp1Q8R370 Gm10209-201ENSMUST00000203397 1607 ntBASIC21.65■■□□□ 1.06
Ushbp1Q8R370 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ushbp1Q8R370 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC21.65■■□□□ 1.06
Ushbp1Q8R370 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Ushbp1Q8R370 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Ushbp1Q8R370 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.06
Ushbp1Q8R370 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
Ushbp1Q8R370 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Ushbp1Q8R370 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms