Protein–RNA interactions for Protein: Q8BTF7

Lig4, DNA ligase 4, mousemouse

Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig4Q8BTF7 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
Lig4Q8BTF7 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
Lig4Q8BTF7 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Lig4Q8BTF7 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
Lig4Q8BTF7 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Lig4Q8BTF7 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Lig4Q8BTF7 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Lig4Q8BTF7 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Lig4Q8BTF7 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC20.51■□□□□ 0.87
Lig4Q8BTF7 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC20.51■□□□□ 0.87
Lig4Q8BTF7 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Lig4Q8BTF7 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
Lig4Q8BTF7 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Lig4Q8BTF7 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Lig4Q8BTF7 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Lig4Q8BTF7 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Lig4Q8BTF7 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Lig4Q8BTF7 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Lig4Q8BTF7 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC20.5■□□□□ 0.87
Lig4Q8BTF7 Gm18671-201ENSMUST00000214826 683 ntBASIC20.5■□□□□ 0.87
Lig4Q8BTF7 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Lig4Q8BTF7 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Lig4Q8BTF7 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Lig4Q8BTF7 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Lig4Q8BTF7 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Lig4Q8BTF7 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC20.5■□□□□ 0.87
Lig4Q8BTF7 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Lig4Q8BTF7 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Lig4Q8BTF7 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Lig4Q8BTF7 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
Lig4Q8BTF7 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Lig4Q8BTF7 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Lig4Q8BTF7 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Lig4Q8BTF7 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Lig4Q8BTF7 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC20.48■□□□□ 0.87
Lig4Q8BTF7 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Lig4Q8BTF7 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Lig4Q8BTF7 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Lig4Q8BTF7 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Lig4Q8BTF7 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Lig4Q8BTF7 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC20.48■□□□□ 0.87
Lig4Q8BTF7 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC20.48■□□□□ 0.87
Lig4Q8BTF7 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC20.48■□□□□ 0.87
Lig4Q8BTF7 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC20.48■□□□□ 0.87
Lig4Q8BTF7 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Lig4Q8BTF7 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Lig4Q8BTF7 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Lig4Q8BTF7 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Lig4Q8BTF7 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Lig4Q8BTF7 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Lig4Q8BTF7 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Lig4Q8BTF7 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Lig4Q8BTF7 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Lig4Q8BTF7 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Lig4Q8BTF7 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Lig4Q8BTF7 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
Lig4Q8BTF7 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Lig4Q8BTF7 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Lig4Q8BTF7 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Lig4Q8BTF7 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Lig4Q8BTF7 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC20.47■□□□□ 0.87
Lig4Q8BTF7 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Lig4Q8BTF7 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Lig4Q8BTF7 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC20.47■□□□□ 0.87
Lig4Q8BTF7 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Lig4Q8BTF7 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Lig4Q8BTF7 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Lig4Q8BTF7 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Lig4Q8BTF7 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC20.46■□□□□ 0.87
Lig4Q8BTF7 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Lig4Q8BTF7 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Lig4Q8BTF7 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC20.46■□□□□ 0.87
Lig4Q8BTF7 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Lig4Q8BTF7 Gm42569-201ENSMUST00000200539 472 ntBASIC20.46■□□□□ 0.87
Lig4Q8BTF7 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Lig4Q8BTF7 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Lig4Q8BTF7 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Lig4Q8BTF7 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
Lig4Q8BTF7 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Lig4Q8BTF7 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Lig4Q8BTF7 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Lig4Q8BTF7 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
Lig4Q8BTF7 Reep4-203ENSMUST00000226563 1444 ntBASIC20.45■□□□□ 0.86
Lig4Q8BTF7 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Lig4Q8BTF7 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Lig4Q8BTF7 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Lig4Q8BTF7 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Lig4Q8BTF7 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC20.45■□□□□ 0.86
Lig4Q8BTF7 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Lig4Q8BTF7 Gm10033-202ENSMUST00000211874 928 ntBASIC20.45■□□□□ 0.86
Lig4Q8BTF7 CT030146.1-201ENSMUST00000220919 217 ntBASIC20.45■□□□□ 0.86
Lig4Q8BTF7 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Lig4Q8BTF7 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Lig4Q8BTF7 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Lig4Q8BTF7 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Lig4Q8BTF7 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC20.44■□□□□ 0.86
Lig4Q8BTF7 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Lig4Q8BTF7 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Lig4Q8BTF7 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Lig4Q8BTF7 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms