Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Ccdc40Q8BI79 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC20.08■□□□□ 0.8
Ccdc40Q8BI79 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ccdc40Q8BI79 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC20.07■□□□□ 0.8
Ccdc40Q8BI79 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
Ccdc40Q8BI79 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Ccdc40Q8BI79 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ccdc40Q8BI79 Cdkn3-203ENSMUST00000227149 1952 ntBASIC20.07■□□□□ 0.8
Ccdc40Q8BI79 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ccdc40Q8BI79 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
Ccdc40Q8BI79 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Ccdc40Q8BI79 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC20.07■□□□□ 0.8
Ccdc40Q8BI79 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC20.07■□□□□ 0.8
Ccdc40Q8BI79 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ccdc40Q8BI79 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc40Q8BI79 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc40Q8BI79 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc40Q8BI79 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc40Q8BI79 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
Ccdc40Q8BI79 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc40Q8BI79 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc40Q8BI79 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc40Q8BI79 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc40Q8BI79 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC20.05■□□□□ 0.8
Ccdc40Q8BI79 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ccdc40Q8BI79 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Ccdc40Q8BI79 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Ccdc40Q8BI79 Gm6802-201ENSMUST00000167843 1983 ntBASIC20.05■□□□□ 0.8
Ccdc40Q8BI79 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ccdc40Q8BI79 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ccdc40Q8BI79 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC20.05■□□□□ 0.8
Ccdc40Q8BI79 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ccdc40Q8BI79 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Ccdc40Q8BI79 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Ccdc40Q8BI79 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ccdc40Q8BI79 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Ccdc40Q8BI79 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ccdc40Q8BI79 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ccdc40Q8BI79 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ccdc40Q8BI79 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ccdc40Q8BI79 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ccdc40Q8BI79 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ccdc40Q8BI79 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ccdc40Q8BI79 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Ccdc40Q8BI79 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ccdc40Q8BI79 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ccdc40Q8BI79 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Ccdc40Q8BI79 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ccdc40Q8BI79 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Ccdc40Q8BI79 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Ccdc40Q8BI79 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ccdc40Q8BI79 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC20.03■□□□□ 0.8
Ccdc40Q8BI79 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ccdc40Q8BI79 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ccdc40Q8BI79 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ccdc40Q8BI79 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ccdc40Q8BI79 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ccdc40Q8BI79 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ccdc40Q8BI79 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ccdc40Q8BI79 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Ccdc40Q8BI79 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Ccdc40Q8BI79 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Ccdc40Q8BI79 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Ccdc40Q8BI79 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Ccdc40Q8BI79 Gm5576-201ENSMUST00000075809 1236 ntBASIC20.02■□□□□ 0.8
Ccdc40Q8BI79 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Ccdc40Q8BI79 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ccdc40Q8BI79 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Ccdc40Q8BI79 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
Ccdc40Q8BI79 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Ccdc40Q8BI79 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ccdc40Q8BI79 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Ccdc40Q8BI79 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ccdc40Q8BI79 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC20.01■□□□□ 0.79
Ccdc40Q8BI79 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Ccdc40Q8BI79 AC140930.3-201ENSMUST00000222935 274 ntBASIC20.01■□□□□ 0.79
Ccdc40Q8BI79 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ccdc40Q8BI79 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
Ccdc40Q8BI79 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ccdc40Q8BI79 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ccdc40Q8BI79 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ccdc40Q8BI79 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC20.01■□□□□ 0.79
Ccdc40Q8BI79 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
Ccdc40Q8BI79 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ccdc40Q8BI79 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ccdc40Q8BI79 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC20■□□□□ 0.79
Ccdc40Q8BI79 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ccdc40Q8BI79 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC20■□□□□ 0.79
Ccdc40Q8BI79 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Ccdc40Q8BI79 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC20■□□□□ 0.79
Ccdc40Q8BI79 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ccdc40Q8BI79 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Ccdc40Q8BI79 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC20■□□□□ 0.79
Ccdc40Q8BI79 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC20■□□□□ 0.79
Ccdc40Q8BI79 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC20■□□□□ 0.79
Ccdc40Q8BI79 Gm42900-201ENSMUST00000197184 2167 ntBASIC20■□□□□ 0.79
Ccdc40Q8BI79 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC19.99■□□□□ 0.79
Ccdc40Q8BI79 Gm10209-201ENSMUST00000203397 1607 ntBASIC19.99■□□□□ 0.79
Ccdc40Q8BI79 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc40Q8BI79 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC19.99■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 16.4 ms