Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Trim56Q80VI1 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC22.98■■□□□ 1.27
Trim56Q80VI1 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Trim56Q80VI1 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC22.97■■□□□ 1.27
Trim56Q80VI1 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
Trim56Q80VI1 AC099934.2-201ENSMUST00000196389 70 ntBASIC22.97■■□□□ 1.27
Trim56Q80VI1 AC156953.1-201ENSMUST00000196953 70 ntBASIC22.97■■□□□ 1.27
Trim56Q80VI1 AC157822.2-201ENSMUST00000200291 70 ntBASIC22.97■■□□□ 1.27
Trim56Q80VI1 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC22.97■■□□□ 1.27
Trim56Q80VI1 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Trim56Q80VI1 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
Trim56Q80VI1 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Trim56Q80VI1 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
Trim56Q80VI1 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Trim56Q80VI1 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC22.96■■□□□ 1.27
Trim56Q80VI1 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Trim56Q80VI1 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC22.96■■□□□ 1.27
Trim56Q80VI1 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Trim56Q80VI1 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
Trim56Q80VI1 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
Trim56Q80VI1 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Trim56Q80VI1 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
Trim56Q80VI1 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC22.95■■□□□ 1.26
Trim56Q80VI1 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
Trim56Q80VI1 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
Trim56Q80VI1 Gm32699-201ENSMUST00000221728 1988 ntBASIC22.95■■□□□ 1.26
Trim56Q80VI1 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Trim56Q80VI1 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC22.95■■□□□ 1.26
Trim56Q80VI1 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Trim56Q80VI1 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC22.94■■□□□ 1.26
Trim56Q80VI1 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Trim56Q80VI1 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
Trim56Q80VI1 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Trim56Q80VI1 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
Trim56Q80VI1 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC22.94■■□□□ 1.26
Trim56Q80VI1 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC22.94■■□□□ 1.26
Trim56Q80VI1 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Trim56Q80VI1 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC22.94■■□□□ 1.26
Trim56Q80VI1 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC22.94■■□□□ 1.26
Trim56Q80VI1 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC22.93■■□□□ 1.26
Trim56Q80VI1 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Trim56Q80VI1 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
Trim56Q80VI1 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Trim56Q80VI1 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC22.93■■□□□ 1.26
Trim56Q80VI1 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Trim56Q80VI1 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC22.93■■□□□ 1.26
Trim56Q80VI1 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Trim56Q80VI1 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC22.93■■□□□ 1.26
Trim56Q80VI1 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
Trim56Q80VI1 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
Trim56Q80VI1 Reep4-203ENSMUST00000226563 1444 ntBASIC22.92■■□□□ 1.26
Trim56Q80VI1 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Trim56Q80VI1 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Trim56Q80VI1 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC22.92■■□□□ 1.26
Trim56Q80VI1 Gm26571-201ENSMUST00000181399 666 ntBASIC22.92■■□□□ 1.26
Trim56Q80VI1 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Trim56Q80VI1 Gm9988-201ENSMUST00000069786 435 ntBASIC22.92■■□□□ 1.26
Trim56Q80VI1 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Trim56Q80VI1 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC22.92■■□□□ 1.26
Trim56Q80VI1 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
Trim56Q80VI1 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC22.91■■□□□ 1.26
Trim56Q80VI1 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
Trim56Q80VI1 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC22.91■■□□□ 1.26
Trim56Q80VI1 Golph3-202ENSMUST00000226517 2359 ntBASIC22.91■■□□□ 1.26
Trim56Q80VI1 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
Trim56Q80VI1 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC22.9■■□□□ 1.26
Trim56Q80VI1 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
Trim56Q80VI1 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC22.9■■□□□ 1.26
Trim56Q80VI1 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Trim56Q80VI1 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC22.9■■□□□ 1.26
Trim56Q80VI1 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC22.9■■□□□ 1.26
Trim56Q80VI1 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Trim56Q80VI1 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC22.9■■□□□ 1.26
Trim56Q80VI1 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC22.9■■□□□ 1.26
Trim56Q80VI1 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC22.9■■□□□ 1.26
Trim56Q80VI1 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC22.89■■□□□ 1.26
Trim56Q80VI1 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
Trim56Q80VI1 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
Trim56Q80VI1 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
Trim56Q80VI1 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
Trim56Q80VI1 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
Trim56Q80VI1 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC22.89■■□□□ 1.25
Trim56Q80VI1 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
Trim56Q80VI1 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC22.89■■□□□ 1.25
Trim56Q80VI1 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Trim56Q80VI1 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC22.89■■□□□ 1.25
Trim56Q80VI1 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.25
Trim56Q80VI1 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC22.89■■□□□ 1.25
Trim56Q80VI1 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Trim56Q80VI1 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Trim56Q80VI1 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Trim56Q80VI1 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
Trim56Q80VI1 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Trim56Q80VI1 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
Trim56Q80VI1 Gm10033-202ENSMUST00000211874 928 ntBASIC22.88■■□□□ 1.25
Trim56Q80VI1 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
Trim56Q80VI1 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Trim56Q80VI1 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Trim56Q80VI1 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Trim56Q80VI1 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Retrieved 100 of 76,532 protein–RNA pairs in 15.9 ms