Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Ubfd1Q78JW9 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ubfd1Q78JW9 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Ubfd1Q78JW9 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ubfd1Q78JW9 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Ubfd1Q78JW9 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ubfd1Q78JW9 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ubfd1Q78JW9 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ubfd1Q78JW9 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
Ubfd1Q78JW9 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Ubfd1Q78JW9 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Ubfd1Q78JW9 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Ubfd1Q78JW9 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ubfd1Q78JW9 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ubfd1Q78JW9 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ubfd1Q78JW9 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Ubfd1Q78JW9 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ubfd1Q78JW9 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ubfd1Q78JW9 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC18.9■□□□□ 0.62
Ubfd1Q78JW9 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ubfd1Q78JW9 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ubfd1Q78JW9 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC18.89■□□□□ 0.61
Ubfd1Q78JW9 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Ubfd1Q78JW9 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC18.89■□□□□ 0.61
Ubfd1Q78JW9 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Ubfd1Q78JW9 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC18.89■□□□□ 0.61
Ubfd1Q78JW9 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ubfd1Q78JW9 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Ubfd1Q78JW9 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ubfd1Q78JW9 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ubfd1Q78JW9 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ubfd1Q78JW9 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Ubfd1Q78JW9 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Ubfd1Q78JW9 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC18.88■□□□□ 0.61
Ubfd1Q78JW9 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
Ubfd1Q78JW9 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Ubfd1Q78JW9 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC18.88■□□□□ 0.61
Ubfd1Q78JW9 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ubfd1Q78JW9 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ubfd1Q78JW9 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ubfd1Q78JW9 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Ubfd1Q78JW9 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ubfd1Q78JW9 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ubfd1Q78JW9 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ubfd1Q78JW9 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ubfd1Q78JW9 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Ubfd1Q78JW9 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Ubfd1Q78JW9 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ubfd1Q78JW9 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC18.87■□□□□ 0.61
Ubfd1Q78JW9 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Ubfd1Q78JW9 Gm7514-201ENSMUST00000209475 934 ntBASIC18.87■□□□□ 0.61
Ubfd1Q78JW9 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Ubfd1Q78JW9 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC18.87■□□□□ 0.61
Ubfd1Q78JW9 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ubfd1Q78JW9 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC18.87■□□□□ 0.61
Ubfd1Q78JW9 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ubfd1Q78JW9 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
Ubfd1Q78JW9 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Ubfd1Q78JW9 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Ubfd1Q78JW9 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ubfd1Q78JW9 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ubfd1Q78JW9 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Ubfd1Q78JW9 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Ubfd1Q78JW9 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ubfd1Q78JW9 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ubfd1Q78JW9 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Ubfd1Q78JW9 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC18.86■□□□□ 0.61
Ubfd1Q78JW9 Gm13146-201ENSMUST00000118508 780 ntBASIC18.86■□□□□ 0.61
Ubfd1Q78JW9 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC18.86■□□□□ 0.61
Ubfd1Q78JW9 Gm29257-201ENSMUST00000186115 639 ntBASIC18.86■□□□□ 0.61
Ubfd1Q78JW9 Gm5297-201ENSMUST00000198555 1171 ntBASIC18.86■□□□□ 0.61
Ubfd1Q78JW9 Ap3s1-204ENSMUST00000225520 957 ntBASIC18.86■□□□□ 0.61
Ubfd1Q78JW9 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ubfd1Q78JW9 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ubfd1Q78JW9 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Ubfd1Q78JW9 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Ubfd1Q78JW9 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
Ubfd1Q78JW9 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ubfd1Q78JW9 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Ubfd1Q78JW9 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ubfd1Q78JW9 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC18.85■□□□□ 0.61
Ubfd1Q78JW9 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Ubfd1Q78JW9 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC18.85■□□□□ 0.61
Ubfd1Q78JW9 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ubfd1Q78JW9 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ubfd1Q78JW9 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ubfd1Q78JW9 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC18.85■□□□□ 0.61
Ubfd1Q78JW9 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC18.85■□□□□ 0.61
Ubfd1Q78JW9 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Ubfd1Q78JW9 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC18.85■□□□□ 0.61
Ubfd1Q78JW9 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ubfd1Q78JW9 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Ubfd1Q78JW9 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ubfd1Q78JW9 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC18.85■□□□□ 0.61
Ubfd1Q78JW9 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
Ubfd1Q78JW9 Gm38205-201ENSMUST00000192243 258 ntBASIC18.84■□□□□ 0.61
Ubfd1Q78JW9 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Ubfd1Q78JW9 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Ubfd1Q78JW9 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ubfd1Q78JW9 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms