Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
Smarca1Q6PGB8 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
Smarca1Q6PGB8 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC21.59■■□□□ 1.05
Smarca1Q6PGB8 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Smarca1Q6PGB8 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC21.59■■□□□ 1.05
Smarca1Q6PGB8 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Smarca1Q6PGB8 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC21.58■■□□□ 1.05
Smarca1Q6PGB8 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Smarca1Q6PGB8 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
Smarca1Q6PGB8 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Smarca1Q6PGB8 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC21.58■■□□□ 1.05
Smarca1Q6PGB8 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Smarca1Q6PGB8 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC21.58■■□□□ 1.05
Smarca1Q6PGB8 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
Smarca1Q6PGB8 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
Smarca1Q6PGB8 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
Smarca1Q6PGB8 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Smarca1Q6PGB8 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Smarca1Q6PGB8 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Smarca1Q6PGB8 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Smarca1Q6PGB8 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Smarca1Q6PGB8 AC165080.2-201ENSMUST00000217491 1530 ntBASIC21.57■■□□□ 1.04
Smarca1Q6PGB8 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Smarca1Q6PGB8 Slc35b2-207ENSMUST00000226086 850 ntBASIC21.57■■□□□ 1.04
Smarca1Q6PGB8 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Smarca1Q6PGB8 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Smarca1Q6PGB8 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Smarca1Q6PGB8 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC21.57■■□□□ 1.04
Smarca1Q6PGB8 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Smarca1Q6PGB8 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Smarca1Q6PGB8 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Smarca1Q6PGB8 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC21.56■■□□□ 1.04
Smarca1Q6PGB8 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Smarca1Q6PGB8 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Smarca1Q6PGB8 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC21.56■■□□□ 1.04
Smarca1Q6PGB8 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Smarca1Q6PGB8 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Smarca1Q6PGB8 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Smarca1Q6PGB8 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Smarca1Q6PGB8 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
Smarca1Q6PGB8 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Smarca1Q6PGB8 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC21.55■■□□□ 1.04
Smarca1Q6PGB8 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Smarca1Q6PGB8 Gm20100-201ENSMUST00000209418 2272 ntBASIC21.55■■□□□ 1.04
Smarca1Q6PGB8 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
Smarca1Q6PGB8 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
Smarca1Q6PGB8 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
Smarca1Q6PGB8 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
Smarca1Q6PGB8 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
Smarca1Q6PGB8 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
Smarca1Q6PGB8 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC21.54■■□□□ 1.04
Smarca1Q6PGB8 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Smarca1Q6PGB8 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
Smarca1Q6PGB8 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC21.54■■□□□ 1.04
Smarca1Q6PGB8 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
Smarca1Q6PGB8 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
Smarca1Q6PGB8 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Smarca1Q6PGB8 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Smarca1Q6PGB8 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Smarca1Q6PGB8 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC21.53■■□□□ 1.04
Smarca1Q6PGB8 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Smarca1Q6PGB8 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC21.53■■□□□ 1.04
Smarca1Q6PGB8 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Smarca1Q6PGB8 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
Smarca1Q6PGB8 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
Smarca1Q6PGB8 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Smarca1Q6PGB8 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Smarca1Q6PGB8 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC21.52■■□□□ 1.04
Smarca1Q6PGB8 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Smarca1Q6PGB8 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC21.52■■□□□ 1.04
Smarca1Q6PGB8 Gm40848-201ENSMUST00000221998 324 ntBASIC21.52■■□□□ 1.04
Smarca1Q6PGB8 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Smarca1Q6PGB8 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Smarca1Q6PGB8 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Smarca1Q6PGB8 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Smarca1Q6PGB8 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Smarca1Q6PGB8 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Smarca1Q6PGB8 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Smarca1Q6PGB8 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Smarca1Q6PGB8 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Smarca1Q6PGB8 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Smarca1Q6PGB8 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Smarca1Q6PGB8 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
Smarca1Q6PGB8 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Smarca1Q6PGB8 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC21.51■■□□□ 1.03
Smarca1Q6PGB8 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC21.5■■□□□ 1.03
Smarca1Q6PGB8 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Smarca1Q6PGB8 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Smarca1Q6PGB8 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Smarca1Q6PGB8 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Smarca1Q6PGB8 Gm11421-201ENSMUST00000122124 294 ntBASIC21.5■■□□□ 1.03
Smarca1Q6PGB8 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Smarca1Q6PGB8 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
Smarca1Q6PGB8 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC21.5■■□□□ 1.03
Smarca1Q6PGB8 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Smarca1Q6PGB8 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC21.5■■□□□ 1.03
Smarca1Q6PGB8 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
Smarca1Q6PGB8 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Smarca1Q6PGB8 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Smarca1Q6PGB8 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms